Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1760 ATGGTTGCATTGATTTTTGGCTGTCCGGCCCTATTTTTGCACCGGAAGATCATTCTTAGTCTCCGCCATCTGCATTCCACCGGTTCTTTAATTAATCGATTTGGTCTGGTTTTCGAGAATTTCTGGAATGGATCTGTTTTTCCTGTTTGCTGGGAGTATTTTTCTAGTATGATGTTGTGGCTACTACGAACTCAATCTGCTCTTGTGCAACTACAATTGGAAGAGCGCCTACTTCGCAACTCATCTGATAATTGGTGTATCATAAATGATGGAACAGATAATCCAACTGTTGTGATGGGCGTTTCTGGGAAACCTGATGAGCTCCTTGACATCAAATCTGTGTTAGGGGATCAAATTCCGGTCATCAGAAGGTTCACAGGGGGTGGAACTGTTATTGTTGATCACAACACAGTATTTGTCACCTTCATATGTAATAAAGATGCTGTTTCCGGACTAAAACCATTTCCTCAACCTATTATGTCCTGGAGTAGTCTATTATATAATAAAGTATTCCAAGGAACTGATTTTCATCTTCGGGAAAATGATTATGTCTTTGGTAACCGCAAGTTTGGTGGCAATGCTCAGTCCATTACTAAAAGCCGATGGATCCACCATACATCTTTTCTGTGGGACTATGAGGTTAGGAATATGACATATCTGAAACATCCAAAACGGGTTCCTGATTACCGTGAGGCAAGGAGCCATTTGGAATTTTTATGCAGCTTGAAGGACTACATGCCAAGACAGTCCCACAACAAGGATGCTGACAGAGCAAGAATTGGAAACAGCTGCAGGCAAGTGACTTACTCTAAGAGAAGAAATGGGATTATGAAGAAAGCAAGGGAGCTAGCTATACTCTGCGATATTGATATCGTTCTCCTCATGTTTTCGCCAAGTGGAAAGCCGGCGCTATATGAAGGTGAACGCAGCAACATCGAGGAGGTCATTACAAAATTTGCTGAATTGACTCCACAGGAGAGGGCAAAAAGGAAAATGGAAAGCCTTGAAGTGCTAAAGAAAACATTCAAGAAGTTAGACCACGATGTTAACATAAATGATTTTGTGGGTTCAAGCTCTCAAGATTTTGAGCAGGAATTGACCAATGAAGTTGCCGTATTGCGAGATCAGATTGGCAAAGCGCATAAGAGACTGAGCTATTGGAGGAATCCTGATAGTATCAACAATATAGAGCAGCTTCAGCAGATGGAAGATCTAATAAGGGAGTCCCTAAACCAAACACGTCTACACAAGGAAAATTTAAGAAGACATCAACTACTCTCACAGGACTTCACGGGCCAGTATCCGGGTGGTGGAATGTCCTTACCTTTGTTAATGGACGAAATGCAAGGCACTCAACCTCTGTTATGGCTTCCCAGCTATAGCACTCAACAGATCACTTTACCAAATGAGCCTAGCTTTCTGCAACCAGGTGATGTTGAATGCTCATTTCCAAGCTATCCTAGTTTCTTCAACCCTGGCAACAAAACTGAAGCTGGCATCTCTGGTCAAGTTGATAGCATGCCACAAGGTGATGGGGCTTTAAATGAATTAAGTGGAACTTCTTGCTCAACACTGCAACTTGGTGATCAATATCCATACCCTACATGTGATGGTTCCAGCTTCCAAGATGAAAAGAAACTGAAAATTGAGATGGAGATGAACTTGCATGCAACTTGTGTGGACACTCAACTAAATGGCAAGTTGGAGCTCTCTAGATCTCTATATGATGATGACCAGTATCCTTGGGCTGCTATACCAGGGCCTTGTAGCATTCCAATGTACCAAAGCAATGCATATCACCATCAGCCAAATTGA 1815 42.2 MVALIFGCPALFLHRKIILSLRHLHSTGSLINRFGLVFENFWNGSVFPVCWEYFSSMMLWLLRTQSALVQLQLEERLLRNSSDNWCIINDGTDNPTVVMGVSGKPDELLDIKSVLGDQIPVIRRFTGGGTVIVDHNTVFVTFICNKDAVSGLKPFPQPIMSWSSLLYNKVFQGTDFHLRENDYVFGNRKFGGNAQSITKSRWIHHTSFLWDYEVRNMTYLKHPKRVPDYREARSHLEFLCSLKDYMPRQSHNKDADRARIGNSCRQVTYSKRRNGIMKKARELAILCDIDIVLLMFSPSGKPALYEGERSNIEEVITKFAELTPQERAKRKMESLEVLKKTFKKLDHDVNINDFVGSSSQDFEQELTNEVAVLRDQIGKAHKRLSYWRNPDSINNIEQLQQMEDLIRESLNQTRLHKENLRRHQLLSQDFTGQYPGGGMSLPLLMDEMQGTQPLLWLPSYSTQQITLPNEPSFLQPGDVECSFPSYPSFFNPGNKTEAGISGQVDSMPQGDGALNELSGTSCSTLQLGDQYPYPTCDGSSFQDEKKLKIEMEMNLHATCVDTQLNGKLELSRSLYDDDQYPWAAIPGPCSIPMYQSNAYHHQPN 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32147733 32157616 - CePI673135_01g017600.1 Cec01g1760 194977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1760 604 PANTHER BIOTIN/LIPOATE A/B PROTEIN LIGASE FAMILY 57 252 IPR053264 -
Cec01g1760 604 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 263 302 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1760 604 FunFam Agamous-like MADS-box protein AGL30 262 344 - -
Cec01g1760 604 CDD LplA 64 248 - -
Cec01g1760 604 Gene3D Bira Bifunctional Protein; Domain 2 53 283 IPR045864 -
Cec01g1760 604 ProSiteProfiles MADS-box domain profile. 265 309 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1760 604 PRINTS MADS domain signature 286 307 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1760 604 PRINTS MADS domain signature 271 286 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1760 604 PRINTS MADS domain signature 251 271 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1760 604 SMART madsneu2 245 308 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1760 604 Pfam Lipoyl protein ligase A/B catalytic domain 67 251 IPR004143 GO:0036211(InterPro)
Cec01g1760 604 SUPERFAMILY Class II aaRS and biotin synthetases 57 252 IPR045864 -
Cec01g1760 604 ProSiteProfiles Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile. 82 254 IPR004143 GO:0036211(InterPro)
Cec01g1760 604 SUPERFAMILY SRF-like 262 343 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1760 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1760 Cec-Chr1:32147733 Cec06g0025 Cec-Chr6:282325 8.60E-11 dispersed
Cec07g1034 Cec-Chr7:25096581 Cec01g1760 Cec-Chr1:32147733 6.50E-14 transposed
Cec01g1760 Cec-Chr1:32147733 Cec05g2649 Cec-Chr5:37170815 6.40E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g564 . . . . . Bpe13g00296 Bma06g00169 . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0841 . . . Lsi02g00079 Csa01g00557 Chy12g01535 Cme12g01985 . . Bda11g01704 . . . . . Sed08g2077 . . . . . . . . Bhi08g01153 Tan05g2433 Cmetu12g0183 . Hepe07g2503 . . Cla04g01192 Cam04g1249 Cec01g1760 Cco01g1807 Clacu04g1279 Cmu04g1256 Cre01g1549 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012582 0 5 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28941 PF00319 SRF-TF 1.30E-18 No_clan Cec TF