Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1774 ATGGTAGAGGAAAACATAGTGGTGCTTTACGGGATGTGGGCTAGCCCTTTTATTAAGAGGGTCCAACTCGACCTCAAAATCAAAGCCATCCCTTTTGAATATGTGGAAGAAGATTTCCAAAACAAAAGCACAGAGCTTCTTAAATTCAATCCTGTTTACAAGAAAGTTCCTGTACTCGTCCACAATGGAAAACCCATTTGTGAATCAGCCTTGTTCGATGGTCTACTTTTATCAATGAAGACAGAAGGGGAAGCACAAGAGAAAGCCATTAAAGACGTGAACGAGAAGCTCAAAGTTGTTGAAGAACAGGGCCTGAAGAGTTTGCTGGTAGAGGGAAGTCCATTTGTGAATGGAGATGAACTAGGATATTTGGACATAGGGATGTTGACAGTGCTTGGAAGGTACAAGATTTATGAAGAGTTTTTTGGAGTGAAGATTGTGGAAGAAGAGGAGATCCCAATTGTTTTCTCATGGTTGAATAGATTGATAGAGCATCCAATTGCAAAGGAGGAAGCTGCTCCCAAAGAAAAGGTTTTGGGGCTTCTTCACATCGTCAGACAAAGATTTCTACACTCCCCTGCTGCTGCTTAA 591 41.62 MVEENIVVLYGMWASPFIKRVQLDLKIKAIPFEYVEEDFQNKSTELLKFNPVYKKVPVLVHNGKPICESALFDGLLLSMKTEGEAQEKAIKDVNEKLKVVEEQGLKSLLVEGSPFVNGDELGYLDIGMLTVLGRYKIYEEFFGVKIVEEEEIPIVFSWLNRLIEHPIAKEEAAPKEKVLGLLHIVRQRFLHSPAAA 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32264004 32264784 - CePI673135_01g017740.1 Cec01g1774 194991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1774 196 Gene3D Glutaredoxin 2 68 - -
Cec01g1774 196 Pfam Glutathione S-transferase, N-terminal domain 8 69 IPR004045 -
Cec01g1774 196 SUPERFAMILY GST C-terminal domain-like 71 189 IPR036282 -
Cec01g1774 196 Pfam Glutathione S-transferase, C-terminal domain 82 166 IPR004046 -
Cec01g1774 196 Coils Coil 83 103 - -
Cec01g1774 196 Gene3D - 69 192 - -
Cec01g1774 196 CDD GST_C_Tau 71 182 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cec01g1774 196 SUPERFAMILY Thioredoxin-like 4 70 IPR036249 -
Cec01g1774 196 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Cec01g1774 196 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 70 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1774 K00799 - - csv:101203519 259.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1774 Cec-Chr1:32264004 Cec01g1776 Cec-Chr1:32271500 4.80E-56 dispersed
Cec01g1773 Cec-Chr1:32262873 Cec01g1774 Cec-Chr1:32264004 3.20E-28 tandem
Cec01g1774 Cec-Chr1:32264004 Cec01g1775 Cec-Chr1:32265841 1.00E-82 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g547 . . . . . . . . Cmo13g01183 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00544 Chy12g01545 . . . . Bda14g00849 . . Bma03g00824 . Sed08g2065 . . Cma13g01129 . . . . . Bhi08g01175 Tan05g2447 Cmetu10g1222 Lac10g0073 Hepe07g2513 . . Cla04g01202 Cam04g1264 Cec01g1774 Cco01g1822 Clacu04g1293 Cmu04g1269 Cre01g1562 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001282 1 2 2 3 1 3 0 4 4 3 1 4 2 5 2 1 4 1 1 2 3 3 1 6 4 1 2 3 2 4 75