Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1797 ATGACGGTCACCACCACCCAACAACTCTTTGTTGTGTTTCTCATTTCTCTCACGCTCCTCACCACCGCAGTTTCGTATTCAGAAGCCCATGGCTTGAACATGAACGCCATTGACAGATGCTGGAGATCCAACCCATACTGGAGAAGAAACAGGCAACAACTGGCCGTTTGCTCGGTTGGTTTCGCTGGAAAAATGACCAACAACATGGGAAGAAATCTCATACGCTACCAAGTCACGGACCCTAGCGACGACCCTATAAACCCACGCCCAGGTACGCTCAGATACGGCGCCACAATGATCAAACCCAAAGTCTGGATCACATTCCCAAAAGATATGCATATTGTGCTCAAGAAGCCGCTTCTCATTAGCAGCTTCACCGCCATCGACGGCCGAGGCGCCACCGTCCACATCACCGGGAATGGGTGTTTGATGGTGTTCAAAGCCACCAACATCATAATCCACGGCCTTATCATCCACCACTGCAGGGCTCAGGCGGCGGGTCGAGTCATGGGCCCCGATTCCAAGATCATTTCACTTGGACACGTGGACGGTGATGCCATTCGTTTAGTAACTGCCTCCAAAGTGTGGATTGACCACAACACGCTGTACCGTTGCGAGGATGGGTTGCTTGACGTCACCCGTGGGTCCACTGACATCACCATTTCCAACAATTGGTTCCGAGATCAAGACAAGGTTATTCTTCTTGGCCACGATGACGGTTATGTCCGAGATCGGAACATGAGAGTCACCGTCGTCTATAACCATTTTGGACCCAATTGCAACCAAAGAATGCCAAGGATTCGATATGGGTATGCACACGTGGCGAACAATTTGTACCAAGGTTGGACGCAATACGCAATTGGAGGGAGCATGAATCCAAGCGTCAAGAGTGAAGCCAACCTTTTCATCGCATCAAAGTCAAAACAAATTATATGGAGCACAGGGAAAGTAGAGGAGACGAAATGGAAGTTTCATTCAGTAAGAGACGTATTTGAAAACGGAGCTTTATTCGCGCAAATCGGTAAGGGAAGAGGAGGTGTAAAGCCAAATTACAACGCCCAACAACGCTTTCCGGTTGCAGATGCCAAGTGGCTTAGATCATTAACAGGCTCCTCCGGGGCATTGCGTTGCTCATCAAACTCAAAATGTTGA 1152 49.22 MTVTTTQQLFVVFLISLTLLTTAVSYSEAHGLNMNAIDRCWRSNPYWRRNRQQLAVCSVGFAGKMTNNMGRNLIRYQVTDPSDDPINPRPGTLRYGATMIKPKVWITFPKDMHIVLKKPLLISSFTAIDGRGATVHITGNGCLMVFKATNIIIHGLIIHHCRAQAAGRVMGPDSKIISLGHVDGDAIRLVTASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRNMRVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQIIWSTGKVEETKWKFHSVRDVFENGALFAQIGKGRGGVKPNYNAQQRFPVADAKWLRSLTGSSGALRCSSNSKC 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32403441 32404840 - CePI673135_01g017970.1 Cec01g1797 195014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1797 383 PANTHER PECTATE LYASE 18-RELATED 15 379 IPR045032 GO:0030570(InterPro)
Cec01g1797 383 PRINTS Pollen allergen Amb family signature 119 135 IPR018082 -
Cec01g1797 383 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Cec01g1797 383 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Cec01g1797 383 PRINTS Pollen allergen Amb family signature 354 377 IPR018082 -
Cec01g1797 383 PRINTS Pollen allergen Amb family signature 263 282 IPR018082 -
Cec01g1797 383 PRINTS Pollen allergen Amb family signature 183 204 IPR018082 -
Cec01g1797 383 SMART amb_all 111 308 IPR002022 -
Cec01g1797 383 Gene3D - 34 376 IPR012334 -
Cec01g1797 383 SUPERFAMILY Pectin lyase-like 34 373 IPR011050 -
Cec01g1797 383 Pfam Pectate lyase 122 302 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1797 Cec-Chr1:32403441 Cec03g0436 Cec-Chr3:4737919 3.80E-89 dispersed
Cec01g1797 Cec-Chr1:32403441 Cec05g2688 Cec-Chr5:37456422 1.20E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1797 K01728 - csv:101217103 675.241