Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1817 ATGATAGGCAATACGGCCACCTCGGCCTCCCCAGTTCTTCCTTCCTCGGAACCTTACTCTTGCTTAGAAAATGGAAACAACAACAACAGCAAGAGGAAAAGAAGGCCTGCAGGCACCCCAGATCCGGATGCAGAGGTGGTGTCTCTGTCCCCAAAAACACTTCTAGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAACCTGCAGATGCACAGGCGACGGCATAAAGTCCCTTGGAAGCTGCTGAAGAGGGAGACTCCTGTTGTGCGGAAGAGGGTTTTCGTATGCCCGGAACCCTCCTGCCTGCACCACGACCCTTGCCACGCCCTCGGCGACCTCGTTGGCATCAAGAAGCACTTCCGAAGGAAGCACAGCAACCATAAACAGTGGGTTTGTGAAAAATGCTCCAAGGGCTACGCCGTTCAGTCCGATTACAAGGCCCATCTCAAAACCTGCGGTACTCGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCCCGGGTGGAAAGCTTTATAGAACACCAAGATGCTTGCAATATGGGGCATCTCCGACAAGAATCCCAAACCATTCAGCCCGCCGCATGTTTGTCCAGAACGGCTTCGAGTCCAAGCCCATCCAGCGACACTAACTTCAGCAGCGCCGCTCCCAATAATTGGCCTGCTCTCGTAGCTCCACCCACATTAAAGCCCGTGGATGCCATCTTCTTAGTCCCCACGGACGACTCCAACAACAACACTAATAACGATCACAATTTAGACCTCAAACTATCAACTGCATCAAATGGCGTGGAAGGGCGGAGCAATAATAAAGGCTCTTCAACCAAACTCCAGCTCTCCATTGGGTCGTTTGATTTTGGAGACAAGAAAAAGATGTTGAAATTGGATGATGAGAAGAAAGGTGGGTTCCGGGGCGGGGCTGGGGATGTTAGAGAAGAAGCTCGGGAGGAGCTAAGGGTGGCAATGGCGGAGAAGGCGTATGCGGAGGAAGCAAGGCAACAGGCGAAGCGGCAAATAGAAATGGCAGAGGAAGAATTCGGGAATGCAAAGAGGATGAGGCAACAGGCCCAGGCGGAGTTAGATAAGGCCACAGCTCTTAAACAAGCAGCAATCAAACAGATAAACTCAACCATTCTTGAGATCACTTGTCAAGCTTGCCAGAAGCAGTTTCAAGCCAAAGCTAAACCAACAACAACAACGACGACGACGAGTGCAGCCACGGATCATGACAATTATTCTGTAGCATTCAGTTACGTCTCCTCCGTCATTACAACCGAAGGTGAAGTAGAGAAAGATCAATCAACCATTATACCTAAACCACCCAACAATTAA 1350 50.96 MIGNTATSASPVLPSSEPYSCLENGNNNNSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQESQTIQPAACLSRTASSPSPSSDTNFSSAAPNNWPALVAPPTLKPVDAIFLVPTDDSNNNTNNDHNLDLKLSTASNGVEGRSNNKGSSTKLQLSIGSFDFGDKKKMLKLDDEKKGGFRGGAGDVREEAREELRVAMAEKAYAEEARQQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQACQKQFQAKAKPTTTTTTTSAATDHDNYSVAFSYVSSVITTEGEVEKDQSTIIPKPPNN 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32616841 32618819 + CePI673135_01g018170.1 Cec01g1817 195034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1817 449 SUPERFAMILY beta-beta-alpha zinc fingers 57 83 IPR036236 -
Cec01g1817 449 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 97 131 - -
Cec01g1817 449 Coils Coil 317 379 - -
Cec01g1817 449 MobiDBLite consensus disorder prediction 201 220 - -
Cec01g1817 449 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Cec01g1817 449 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 164 198 - -
Cec01g1817 449 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 383 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cec01g1817 449 MobiDBLite consensus disorder prediction 1 47 - -
Cec01g1817 449 FunFam protein indeterminate-domain 12-like 39 107 - -
Cec01g1817 449 CDD ATP-synt_Fo_b 313 394 - -
Cec01g1817 449 Gene3D Classic Zinc Finger 122 200 - -
Cec01g1817 449 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Cec01g1817 449 Gene3D Classic Zinc Finger 38 100 - -
Cec01g1817 449 MobiDBLite consensus disorder prediction 1 27 - -
Cec01g1817 449 Pfam Zinc finger, C2H2 type 60 82 IPR013087 -
Cec01g1817 449 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Cec01g1817 449 SMART c2h2final6 137 164 IPR013087 -
Cec01g1817 449 SMART c2h2final6 101 131 IPR013087 -
Cec01g1817 449 SMART c2h2final6 60 82 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0687 Cec-Chr1:7648167 Cec01g1817 Cec-Chr1:32616841 8.30E-92 dispersed
Cec01g1817 Cec-Chr1:32616841 Cec04g1633 Cec-Chr4:35643273 7.40E-60 dispersed
Cec01g1817 Cec-Chr1:32616841 Cec01g1580 Cec-Chr1:30412475 5.20E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28952 PF00096 zf-C2H2 0.0042 CL0361 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1817 K25871 - csv:101209426 746.117