Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0002 ATGTTTTCCGTGAAAGCGCGGCTATTTCTGGCTTTCTTCTTTGTTATTCGAATTCATAACATCTTCTACTACACAGATCCGAACGATGTTGAAATCCTGTTATCGTTGAAAGAGGTATGGAAAAATACGCCACCGACATGGAGGACATCAAGCGATCCATGTGGAGATCTCTGGGAAGGAGTCAGTTGCAACGATTCTAGAGTCACTGAATTAAAATTACCCTATATGGGCCTTGAAGGCCATCTTAGTGGTCACATTGGAGGCCTTACTGAACTAATAACATTGGACCTGTCATTTAATAGATATCTCACTGGTCCACTCTCTCCTAGGTTGGGGGATTTGCGAAATTTGAAGACCTTAATTCTAGCTGCATGTGGCTTCAGTGGTAATATTCCCCAAGAGTTGGGAAACCTTACTCAGTTGATGTCCTTGGCTTTGAATTCAAACCAACTCATTGGTTCTATACCACGTAGTCTTGGAAAGCTCTCCAAACTGGTTTTGCTAGACTTGATGGAGAATCAGTTGAATGGATCTCTCCCTGTCTCAACTTTTGATTCACCAGGTCTGGACCTTCTTCTCCAAGCAAAGCACTTAGTATTTGATCAGAATCAGTTTTCTGGGAGTATTCCACAAACCTTGGGACTTGTTAACACCCTTGAACTTCTCCGACTTGATAGGAATTCTCTAACAGGAATTGTCCCATCAGATCTTACCAACTTAAAACAAATCCTTCAGTTGAATTTAGCACACAATAATCTGACAGGGCCGTTGCCAAATTTAACTCAAATGACTTCACTATGTGTTGTGGACCTTAGTTACAACTCATTTGATGCATCAACAGCCCCAGATTGGTTCTCAAGCTTACCATCTCTCACCAGTTTGATCGTTGAATATGGGGAACTGGAAGGACCTGTCCCAGAAACAATCTTTAGCTTACCACAGATACAACAAATAAAACTGGGCCACAATTTATTTGGTGGGATATTGAGGATGGGTGGTAACATCAGTCAGCATCTGGAGCTTGTTAATTTGGAAGACAATCATATTACCCAATTTGAATTATTATCTGGATATAATAAAACTTTGATGCTTGAAGGAAATCCTGCGTGCAACAATAATGTTGATCCCCTCGTGAAACAAAATCATTATTGCCTACCTAATTCACAACCAGCTGATCTAAAGCCTAATTTTGGGAGTCCAGTACTCAACTGTGAAACTAGATTGTGCTCTAATGGCGAGAAGAATAACCCTCAAAACTGTGAATGTCAATATCCCTTTGTAGGGTCTTTCTACTTCAGAGGGGCCTCCATCAGAGACTTGTCTAATGACACCTTGTTTCAAAATTTGAGGATTGCGTCTGCGTTGAGTTATCAAACTTTCCTTCTTTCCCCTGATTTAGGATCATTTTATTTCATTCCACTTGATCAGTACAATTTTTTAGCTCCAGATGTTGGAAATTTTTGTAGCATTAGCAACAGGTGGCTTTTTGGGATTGCAATTGGTTGTGGCTTACTGCTCCTAACCCTATTTGGAGTTGGAGTATATGCAATTAAGCAGAAGAAAAGAGTATCAAAAGCGATTTCATTGAGCAAGCCATTTGCTTCCTGGTCATCTATTGAACAAATAAGTGGAGAAGCACCACAATTAAAGGGAGCCATATATTTTTCTTATGATGAGCTTAGGAAGTTGACAAATAATTTCTGCATAAGTAATGAGATTGGAACTGGAGGATATGGGAAGGTCTATAGAGGAATTACTGGGTATGGACAAGTTTTCGCAATCAAAAGAGCTAGGCAAGGCTCGAAACAGGGTGCACATGAGTTTAAGACTGAGATTGAATTGCTTTCACGAGTTCATCATAAGAATCTCGTTGGCCTTGTAGGATTTTGTTGTGAACAGGGAGAACAGATGCTTGTTTATGAACTCATGCCTTATGGATCGCTTCGTGACATCCTTGGGAGTTGTGTCCATCTTGATTGGAAGAGAAGACTTGAGATAGCACTTGACTCTGCAAGAGGACTAGCTTACCTTCACGAGTTTGCAAATCCTCCAATAATCCATAGAGATATTAAGTCCTCCAATATTCTTTTAGATGAATATTTTAATGCGAAGGTTGCAGATTTTGGCCTGTCCAAGCTTGTATTTGACCATGAAAAGGGACATATTTCTACTGGAGTTAAAGGCACGTGGGGGTATTTAGATCCTGAATATTACACAACGCAACGATTAACTAAGAAGAGTGATGTGTACAGCTTTGGAGTTGTTATGCTTGAATTGATTACTTCTAATCGGCCAATTGAGAAAGGGATATATTTAGTTCGTGAAGTGGTTCGACTAATGAACAAGAGCGACAAAGCATATTACGGATTGATGAATATAATAGATGCAACTGTTATAAATGAGATGACAAATCCAATTGAGTTTGGAAGGTTTTTAGAGTTGGCCATAAAATGTGTTGAAGAATCAACTATAAATCGCCCCACGATGAGCCAAATGAAAACTTACAAAGATAGGGTCATAAGAAAGGCAAAGGCCAAAGCTTGCATATATGCAGCAGTGGCTCCTGTTGTATTTAACAGAATCATGGCCTTGAAGTTAACAAAGGAGATCTGTGGATTCCTCAAAGCAAGGCGAAGGTGGAAAAGAGAAGAAGTGGACACGGAAAAAGGGAAGTGGCGCAGTAGCTCAGAATCTGCAGTAAAGGATGCTGGAATTGCGGGTTTCAGTAAAGGCAGTGCATGCAAGCACTGTGACAAGGAGTTGTTCAAAGACCTTGACAAGTCATTTAAGTCCATGGTGAAGATAGGGAATGGTGAATATCTAGAAGTGACGGGGAAGGACATGGTGTCAATAGATAGTCGTGCATGA 2868 40.27 MFSVKARLFLAFFFVIRIHNIFYYTDPNDVEILLSLKEVWKNTPPTWRTSSDPCGDLWEGVSCNDSRVTELKLPYMGLEGHLSGHIGGLTELITLDLSFNRYLTGPLSPRLGDLRNLKTLILAACGFSGNIPQELGNLTQLMSLALNSNQLIGSIPRSLGKLSKLVLLDLMENQLNGSLPVSTFDSPGLDLLLQAKHLVFDQNQFSGSIPQTLGLVNTLELLRLDRNSLTGIVPSDLTNLKQILQLNLAHNNLTGPLPNLTQMTSLCVVDLSYNSFDASTAPDWFSSLPSLTSLIVEYGELEGPVPETIFSLPQIQQIKLGHNLFGGILRMGGNISQHLELVNLEDNHITQFELLSGYNKTLMLEGNPACNNNVDPLVKQNHYCLPNSQPADLKPNFGSPVLNCETRLCSNGEKNNPQNCECQYPFVGSFYFRGASIRDLSNDTLFQNLRIASALSYQTFLLSPDLGSFYFIPLDQYNFLAPDVGNFCSISNRWLFGIAIGCGLLLLTLFGVGVYAIKQKKRVSKAISLSKPFASWSSIEQISGEAPQLKGAIYFSYDELRKLTNNFCISNEIGTGGYGKVYRGITGYGQVFAIKRARQGSKQGAHEFKTEIELLSRVHHKNLVGLVGFCCEQGEQMLVYELMPYGSLRDILGSCVHLDWKRRLEIALDSARGLAYLHEFANPPIIHRDIKSSNILLDEYFNAKVADFGLSKLVFDHEKGHISTGVKGTWGYLDPEYYTTQRLTKKSDVYSFGVVMLELITSNRPIEKGIYLVREVVRLMNKSDKAYYGLMNIIDATVINEMTNPIEFGRFLELAIKCVEESTINRPTMSQMKTYKDRVIRKAKAKACIYAAVAPVVFNRIMALKLTKEICGFLKARRRWKREEVDTEKGKWRSSSESAVKDAGIAGFSKGSACKHCDKELFKDLDKSFKSMVKIGNGEYLEVTGKDMVSIDSRA 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32164 48713 - CePI673135_02g000020.1 Cec02g0002 195055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0002 955 FunFam Leucine-rich repeat family protein 28 184 - -
Cec02g0002 955 CDD STKc_IRAK 573 831 - -
Cec02g0002 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 685 697 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec02g0002 955 Pfam Protein tyrosine and serine/threonine kinase 569 832 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec02g0002 955 FunFam Leucine-rich repeat receptor-like protein kinase 643 847 - -
Cec02g0002 955 SMART serkin_6 567 840 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec02g0002 955 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Cec02g0002 955 ProSitePatterns Protein kinases ATP-binding region signature. 573 595 IPR017441 GO:0005524(InterPro)
Cec02g0002 955 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515(InterPro)
Cec02g0002 955 Pfam Leucine Rich Repeat 219 240 IPR001611 GO:0005515(InterPro)
Cec02g0002 955 SUPERFAMILY L domain-like 44 423 - -
Cec02g0002 955 Gene3D Ribonuclease Inhibitor 263 389 IPR032675 -
Cec02g0002 955 ProSiteProfiles Protein kinase domain profile. 567 840 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec02g0002 955 Gene3D Ribonuclease Inhibitor 188 262 IPR032675 -
Cec02g0002 955 FunFam receptor-like protein kinase FERONIA 534 642 - -
Cec02g0002 955 Gene3D Ribonuclease Inhibitor 27 187 IPR032675 -
Cec02g0002 955 Gene3D Phosphorylase Kinase; domain 1 539 642 - -
Cec02g0002 955 PANTHER RECEPTOR-LIKE PROTEIN 55 42 832 - -
Cec02g0002 955 SUPERFAMILY Protein kinase-like (PK-like) 539 833 IPR011009 -
Cec02g0002 955 Gene3D Transferase(Phosphotransferase) domain 1 643 852 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0002 Cec-Chr2:32164 Cec10g1331 Cec-Chr10:27598337 6.10E-221 dispersed
Cec02g0002 Cec-Chr2:32164 Cec10g2293 Cec-Chr10:37101359 5.30E-241 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71712 PF07714 PK_Tyr_Ser-Thr 2.50E-43 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0002 - - - 0.0