Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0026 ATGCGTCTCGACAGGTGGGGGCAATCGGAGCTTTTAGAGTGGGACAAGAATGCTATAATCCGACGTGCTGCAATTCCGGCTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAGCATACTCGCCAGGGAAAAGGCCATGGTTGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTATTACTTGATCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTTGCTAAGACGGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAAGCTGCTGAAGGTGAGCAGTATGAGCTCCCGTTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTTGTGTGCATGTACTTGGATTCCAGTGTGGCAGACCTTGAGAGAGACGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACCCGTATTCTTGCACGCGTTCAGAAGGTGCAATTGGTGGCATTCCCAAATCCTGCGTATATTAACATTTCATTACATCCTCTGGCAGTTTGGAGAGCATGTTTGATGGCAGATTCAGGGAAATGGAAACTTGAAGAGCTAATCCAGCGAGTGGAGCAAGTGAACCTACTTGGGAGATTCCCAATCTATGGAAAGGTGCGGGATGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTTGATACTTTGCCCGGAGGTGTGGCTTCCAACAGCACGACTGCTATCGTTCCTCATCTTCGTCTACTTAGTTCCACCAGGAGTGGCAGTGTGGTGACCAGCAACCTTTTGGATGATAATGACGTAGAGGACTTGGAGATGTTGCTCGAGGCATACTTTATGCAATTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGATGACACCGAGGATTATGTTAATATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTAACCCTGACAATTGCTTCATTTGCCATAGCTGTTGAAACCTTAATCGCCGGATTGTTTGGTACGAACATCCCTTGTACATTGTACGAGACGGACGGGGTGTTCGGGTACTTTGTCGGAGGTTCTTCAGCAGGATGTTTGTTGCTTTTCCTGCTTATTTTTGGGTATGCAAAGTGGAAGAAGCTTCTTGGTTCATGA 1284 44.16 MRLDRWGQSELLEWDKNAIIRRAAIPARDLRILGPVFSHSSSILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVQLVAFPNPAYINISLHPLAVWRACLMADSGKWKLEELIQRVEQVNLLGRFPIYGKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDTLPGGVASNSTTAIVPHLRLLSSTRSGSVVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGTNIPCTLYETDGVFGYFVGGSSAGCLLLFLLIFGYAKWKKLLGS 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 264750 269574 - CePI673135_02g000260.1 Cec02g0026 195079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0026 427 CDD Mrs2_Mfm1p-like 1 424 IPR039204 -
Cec02g0026 427 Gene3D - 1 71 - -
Cec02g0026 427 Gene3D Magnesium transport protein CorA, transmembrane region 73 189 - -
Cec02g0026 427 Gene3D Magnesium transport protein CorA, transmembrane region 216 358 - -
Cec02g0026 427 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 2 424 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cec02g0026 427 FunFam Magnesium transporter MRS2-1 1 71 - -
Cec02g0026 427 Pfam Magnesium transporter MRS2-like 13 187 - -
Cec02g0026 427 Pfam Magnesium transporter MRS2-like 308 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0026 K16075 - - rcu:8267734 514.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0026 Cec-Chr2:264750 Cec05g1124 Cec-Chr5:10038779 1.80E-196 dispersed
Cec02g0026 Cec-Chr2:264750 Cec06g0671 Cec-Chr6:7578908 1.60E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g1277 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla02g00024 Cam02g0026 Cec02g0026 Cco02g0023 Clacu02g0026 Cmu02g0026 Cre02g0369 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g1297 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Cec08g1072 . 6 380 MRS2 Gene Family AT1G16010 52.4 2.1e-107 386.3
Cec06g0671 . 1 359 MRS2 Gene Family AT5G64560 79.9 1.6e-156 549.3
Cec07g0092 . 594 966 MRS2 Gene Family AT5G64560 68.8 1.8e-131 466.1
Cec02g0743 . 14 495 MRS2 Gene Family AT3G19640 64.6 7.8e-156 547.4
Cec05g1124 . 53 443 MRS2 Gene Family AT3G58970 69.1 4.9e-141 498.0
Cec02g0026 . 1 427 MRS2 Gene Family AT3G58970 60.4 4.9e-125 444.9
Cec08g1072 . 6 380 MRS2 Gene Family AT2G03620 68.4 4.1e-137 485.0
Cec10g1297 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Cec06g0671 . 1 321 MRS2 Gene Family AT5G09690 77.2 1.0e-127 453.4
Cec07g0092 . 594 928 MRS2 Gene Family AT5G09690 63.7 2.4e-108 389.0
Cec10g1297 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.6e-78 288.1
Cec06g0671 . 23 281 MRS2 Gene Family AT5G09720 69.1 7.2e-88 320.9
Cec07g0092 . 630 888 MRS2 Gene Family AT5G09720 61.7 4.8e-76 281.6
Cec10g1297 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.3e-201 696.8
Cec08g1072 . 6 380 MRS2 Gene Family AT1G80900 54.2 4.0e-106 382.1
Cec01g1374 . 16 439 MRS2 Gene Family AT5G22830 68.5 1.6e-150 529.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47