Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0140 ATGACAATTTTTTCCTTCTTTACTAGAGCTTCGAGAGCTTTTCATGGCTCCCCTGCATATTCAAAGCTTCTACTCATCAGCACCCTAAGTAGCGGAGGTCTATTGGCATATGCAGATTCACAATCAGACGTTGACAGTCCTATTGAAGAGTGCCGAGAAAAGAGAATTCTAGTGCTTGGAACAGGATGGGCCGGTACCAGTTTCCTCAAGGATCTGGATGCTTCAAAATATGATGTTCAGGTTGTTTCGCCTCAAAATTATTTCTCATTTACTCCTTTATTGCCTAGTGTTACATGTGGATCGGTTGAAGCACGAAGCATTGTTGAACCGGTTCGAAACATCGTGAAGAAGAGAAAAGGTGAAATTAAATTCTGGGAAGCTGAATGCATTAGCATTGATGCTGCTAACAAGAAGGTTTTCTGCCGGTCTAATGTTGACAACAACTTGGTTGGAAATAGGGAGTTTGCCTTAGAATATGACTATTTGATAATAGCAATGGGAGCGCAAGTTAATACTTTTAATACTCCTGGTGTGAAGGAGAACTGCCATTTTCTCAAGGAAGTGGAAGATGCTCAGAAGATCCGCAGAAGTGTGATAGATTGCTTTGAAATGGCTGTGATTCCTAGTCTAAGTGAAGAAGAGCGAAGGAGAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACTGGGGTTGAATTTGCTGCAGAGCTTCATGACTTTTTTGAAGAAGATTTAGTTAACTTATATCCTTCGGTTAAAGATCTGGTGAAAATTTCAGTAATTCAGTCCGGAGATCACATCTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCCGAGCAAAAATTCCTAAGAGATGGAATCGATGTGTACACAGGATGTCGAGTTGTCAGTGTATCTGATAAAGAAATTAAGATGAAGGTGAAATCAACTGGAGAACTTTGTTCAATGCCGCATGGACTAATTGTGTGGTCTACAGGCATTATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGCCAGGGTAGTAGACGCATTCTAGCCACTGATGAATGGCTTCAAGTGAAGGGCGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGCAAAATTATGGAAGATATCGCCGCCATATTTAAAGCCGCAGACAAAGATAACTCTGGAACCCTGACAGTTATAGAATTTCAAGATGTTCTAGATGATATCATCATAAGGTATCCTCAAGTAGAAATATATTTGAGGAGCAAACATCTACGCGATGTAAAAGATCTATTAAAAGATTCTCAGGGACATGAGAACGAAATAGATATTGAAGGGTTTAAGTCGGCTCTTTCTCATGCTGACACGCAGATGAAAAGTCTGCCTGCTACTGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTTGCAGGTGCTTCAACCGCAGGGAGCATTGCACTGAGAATCCTGAAGGCCCTCGACGTTTTAAGAGTTCTGGACGTCATCAGTTTCTTCCGTTTCGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGGGGAGAACAAGCAGCTGCAGAACTCCCTGGAGATTGGGTTTCCATGGGTCACAGCACTCAATGGCTATGGTATTCTGTATATGCAAGCAAGCAAGTCAGCTGGCGCACAAGGTATCTAGTGGTATCAGATTGGACAAGGAAGTTCATATTTGGAAGAGACTCAAGCCGCATCTGA 1725 42.43 MTIFSFFTRASRAFHGSPAYSKLLLISTLSSGGLLAYADSQSDVDSPIEECREKRILVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGSVEARSIVEPVRNIVKKRKGEIKFWEAECISIDAANKKVFCRSNVDNNLVGNREFALEYDYLIIAMGAQVNTFNTPGVKENCHFLKEVEDAQKIRRSVIDCFEMAVIPSLSEEERRRNLHFVIVGGGPTGVEFAAELHDFFEEDLVNLYPSVKDLVKISVIQSGDHILNAFDERISSFAEQKFLRDGIDVYTGCRVVSVSDKEIKMKVKSTGELCSMPHGLIVWSTGIMTRPVVKDFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATIDQRKIMEDIAAIFKAADKDNSGTLTVIEFQDVLDDIIIRYPQVEIYLRSKHLRDVKDLLKDSQGHENEIDIEGFKSALSHADTQMKSLPATAQVAAQQGAYLCRCFNRREHCTENPEGPRRFKSSGRHQFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRI 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1437035 1442033 + CePI673135_02g001400.1 Cec02g0140 195193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0140 574 Pfam NDH2 C-terminal domain 509 570 IPR054585 -
Cec02g0140 574 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509(InterPro)
Cec02g0140 574 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 45 405 - -
Cec02g0140 574 SUPERFAMILY EF-hand 329 456 IPR011992 -
Cec02g0140 574 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Cec02g0140 574 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 422 573 - -
Cec02g0140 574 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 380 IPR023753 GO:0016491(InterPro)
Cec02g0140 574 SUPERFAMILY FAD/NAD(P)-binding domain 53 272 IPR036188 -
Cec02g0140 574 SUPERFAMILY FAD/NAD(P)-binding domain 219 373 IPR036188 -
Cec02g0140 574 Gene3D - 423 573 - -
Cec02g0140 574 Gene3D - 47 393 - -
Cec02g0140 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Cec02g0140 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
Cec02g0140 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
Cec02g0140 574 PANTHER NADH DEHYDROGENASE 43 574 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0140 Cec-Chr2:1437035 Cec02g2048 Cec-Chr2:38228228 3.70E-72 dispersed
Cec02g0140 Cec-Chr2:1437035 Cec02g1805 Cec-Chr2:35901316 1.10E-228 wgd
Cec02g0140 Cec-Chr2:1437035 Cec03g0537 Cec-Chr3:5629312 1.10E-236 wgd
Cec02g0140 Cec-Chr2:1437035 Cec04g1972 Cec-Chr4:37952659 1.10E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0140 K03885 - csv:101203130 1095.11