Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0192 ATGCCAGCCGGAATGATTATTCCAGCGAGAAACACGGCGACGTCGATGATCGGAAGGAACGGAAGTGTTGGGATGTTTGGGTCTCCAGGCAGCCTTGTTCTTGGTCAGGAAATACAAGGAGTGGAAATGGGAGAAAATGAATATGGGAGAATGAGAGAAACAGAAGAATTTGAGAGTGGAACAAAATCAAGTAGCGAGAACCACGAGGTTGGTTCCGGTGACGACCAACTCAACCAACGCCCCAAAAAGAAGCGTTACCACCGCCACACTCAGCATCAGATCCAACAAATGGAAGCGTTCTTCAAGGAATGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTGAGTAGGGAATTGAATTTAGAGCCATTACAAGTGAAGTTTTGGTTTCAAAACAAGCGAACTCAGATGAAGACCCATCATGAGCGACATGAAAACACCCAGCTCCGAACAGAAAATGAGAAGCTTAGAGCAGATAATATGAGATATAGAGAAGCGCTTAGTAATGCCACGTGTCCCAATTGTGGAGGTCCGACCGCCATTGGAGAGATGTCCTTTGACGAACATCATCTCAGGCTTGAAAATGCCCGCTTGAGAGAAGAGATCGATCGCATTTCAGCCATAGCAGCAAAATACGTTGGAAAGCCAGTATCAAACTACCCTCTTCTTTCTACACCAATTCCTTCACGTCCTCTAGAACTTGGAATGGGAGGCTATGGAGGCCACGATTCCGGCGGGGACATGTACGGGGCAGCGGACCTTCTCCGGACCATAAGCGCCCCATCGGAAGCGGACAAGCCGATAATTATCGAGCTTGCAGTTGCAGCCATGGAGGAGCTGGTCCGAATGGCTCAGATGGGTGAGCCTTTGTGGATGACAGGGCTTGATGGCTCAACTGCTGTGCTTAATGAAGAGGAATATGTTAGAAGCTTTCCTAGAGGAATTGGTCCAAAGCCCTCTGGGTTCAGTTGTGAAGCTTCCCGTGCTACTGCTGTTGTCATTATGAATCATATTAGCCTCGTTGAGATGCTCATGGATGTGAATCAATGGTCAACAATATTCAGTGGGATTGTGTCGAGAGGCATGACATTAGAAGTATTATCAACCGGCGTTGCTGGAAACTACAACGGAGCATTACAAGTGATGACATCCGAATTACAAGTGCCTTCACCCCTTGTTCCAACTCGGGAGAGCTATTTCGTGAGGTATTGTAAACAACATGGTGAGGGAACATGGGCTGTGGTGGACGTTTCCTTAGACAATTTACGCCCAGCTCCTGCACTTAGATGTAGAAGAAGGCCATCCGGCTGCTTAATGCAAGAAATGCCCAATGGCTATTCTAAGGTTACCTGGGTTGAGCATGTTGAGGTGGATGATCGTGGGGTCCACAGTTTATACAACCAGCTAGTTAGGTCCGGCCACGCGTTCGGCGCGAGGCGTTGGATCGCCACGTTGGATCGTCAATGTGAACGGCTTGCCAGTGCCATGGCCACAAGTATTCCTACTGGTGATGCTGGAGTGATAACAAATCAAGAAGGAAGAAAAAGCATGTTGAAGCTGGCGGAGAGAATGGTGATGAGCTTTTGCGGTGGAGTGAGCGCGTCAACCACACACACTTGGACGACTCTATCGGGAACTGGAGCTGACGACGTTAGAGTTATGACAAGAAAGAGTGTTGACGATCCCGGCAGACCTCCCGGCATTGTCCTCAGCGCCGCCACTTCCTTTTGGCTTCCTCTTCCTCCCGACAGAGTCTTCCATTTTCTCAGAGATGAAAATTCTCGTAATGAGTGGGATATTCTTTCAAATGGTGGAGTTGTTCAAGAAATGGCTCATATTGCCAATGGCCGCGACACGGGCAACTGTGTTTCTTTGCTACGAGTTAACAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAAAGCAGCACAGATCAAACAGCCTCGTTTGTAATCTACGCGCCGGTGGACATTGTGTCCATCAACGTCGTACTAAACGGCGGAGATCCTGATTACGTGGCCCTTCTCCCCTCCGGATTCGCCATTCTTCCCGATGGAAGCACTGGGTCCAGCGGCGGCGCTGCCAATGGGGTGGCTGAACATGGGTCCGCCGGGTCGCTTTTAACGGTGGCGTTTCAGATTTTGGTTGACTCGCCTCTTTGTCATGTGATAATCCTTGAACCCCTCACTCTCACCTCAGAAGGAGAAAAATGA 2220 49.05 MPAGMIIPARNTATSMIGRNGSVGMFGSPGSLVLGQEIQGVEMGENEYGRMRETEEFESGTKSSSENHEVGSGDDQLNQRPKKKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMKTHHERHENTQLRTENEKLRADNMRYREALSNATCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSNYPLLSTPIPSRPLELGMGGYGGHDSGGDMYGAADLLRTISAPSEADKPIIIELAVAAMEELVRMAQMGEPLWMTGLDGSTAVLNEEEYVRSFPRGIGPKPSGFSCEASRATAVVIMNHISLVEMLMDVNQWSTIFSGIVSRGMTLEVLSTGVAGNYNGALQVMTSELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPAPALRCRRRPSGCLMQEMPNGYSKVTWVEHVEVDDRGVHSLYNQLVRSGHAFGARRWIATLDRQCERLASAMATSIPTGDAGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPLPPDRVFHFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESSTDQTASFVIYAPVDIVSINVVLNGGDPDYVALLPSGFAILPDGSTGSSGGAANGVAEHGSAGSLLTVAFQILVDSPLCHVIILEPLTLTSEGEK 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1809795 1816801 - CePI673135_02g001920.1 Cec02g0192 195245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0192 739 Gene3D - 307 486 IPR023393 -
Cec02g0192 739 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 66 720 IPR042160 -
Cec02g0192 739 MobiDBLite consensus disorder prediction 53 90 - -
Cec02g0192 739 CDD homeodomain 83 141 IPR001356 GO:0003677(InterPro)
Cec02g0192 739 SUPERFAMILY Homeodomain-like 67 139 IPR009057 -
Cec02g0192 739 CDD START_ArGLABRA2_like 266 490 - -
Cec02g0192 739 Pfam Homeodomain 83 138 IPR001356 GO:0003677(InterPro)
Cec02g0192 739 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec02g0192 739 ProSiteProfiles START domain profile. 262 494 IPR002913 GO:0008289(InterPro)
Cec02g0192 739 SUPERFAMILY Bet v1-like 510 716 - -
Cec02g0192 739 FunFam Homeobox-leucine zipper protein HDG1 70 156 - -
Cec02g0192 739 SMART START_1 271 491 IPR002913 GO:0008289(InterPro)
Cec02g0192 739 Pfam START domain 272 491 IPR002913 GO:0008289(InterPro)
Cec02g0192 739 Coils Coil 146 166 - -
Cec02g0192 739 SMART HOX_1 81 144 IPR001356 GO:0003677(InterPro)
Cec02g0192 739 FunFam Homeobox-leucine zipper protein GLABRA 2 271 490 - -
Cec02g0192 739 SUPERFAMILY Bet v1-like 264 493 - -
Cec02g0192 739 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677(InterPro)
Cec02g0192 739 Gene3D - 68 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0192 Cec-Chr2:1809795 Cec06g0005 Cec-Chr6:119486 1.60E-208 dispersed
Cec02g0192 Cec-Chr2:1809795 Cec02g0890 Cec-Chr2:11270026 0.00E+00 wgd
Cec02g0192 Cec-Chr2:1809795 Cec03g0473 Cec-Chr3:5045051 1.50E-243 wgd
Cec02g0192 Cec-Chr2:1809795 Cec04g1921 Cec-Chr4:37595892 7.70E-256 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28975 PF01852 START 1.60E-56 CL0209 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0192 K09338 - csv:101219415 1342.79