Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0195 ATGGTTAATTTTGTTGCTCTGCCGCTGTTGCTATATACTTTGATATGGCTGTTTCAGTTCACCGGTCCGATCTGCTGCCAAAAACCTTCTGTGGTAAACATTGGGGCGGTTTTTACTTTCAATTCCGTCATCGGCAGAGCAGCAAAGCCGGCCATGGAAGCAGCAATCTCCGACATAAACGCCGACCCCAATATCTTGAATGGCATAAAGCTTAACTTCCTCATGGAAGACTCTAATTGTAGTGGCTTCCTGGGCTCCGTTGAAGCTTTGCAGGTACTTGAGAAAGAGATTGTAGCCATGATTGGCCCACAATCCTCAGTAGTGGCTCATGTGATTTCTCAAATTGTTAATGGTTTACAAATTCCTCAAGTATCCTATGCTGCTACTGATCCAACATTATCCACTCTGCAACTCCCTTTCTTCCTCCGAACCACTTCAAGTGACTCTTACCAAATGACTGCCATGGCTGACTTGATTGATTACTATGGCTGGAAAGAAGTCATTGCTATATTTTTGGATGATGATTATGGCAGAAATGGGATATCTTTTCTGGGAGATGAACTTCAGAAGAAAATGTGTCGTATTTCTCATGAATTCCCTTTGCCTTCTCTGACTAATCTAACTAAGATCACACAAATACTTAACGATTCTAAATTGCTTGGTCCTCGTGTTTATGTAGTTCATGTAGGCCCTGATCCCCAATTAAGAATCTTCACCATTGCTCATAAACTTGGTATGCTTACAAGCAATTACGTTTGGTTCGCAACCGATTGGCTTTCTACAACTCTTGATTCTTCTTCACCAATAACCAATGGTGCTTCACTCGATGTACTTAACGGAGTCGTGGGGTTGCGCCCTCATACTCCAGAGTCTAAACGAAAGAGGGATTTGTGGGATCGGTTGAGCAAAACGCAGCCAAAAGGTTTGACCAATTCTGTGTTGAATGTTTATGGACTGTATGCTTATGATTCAGTATGGGTTGTTGCGAAGGCAGTAGATAAGTTTCTCAAAGAAAATGGGAATATCATAACATTTTCGTCCACAGGTAAAGTGTTTGGCTCTAATGGAAGTGCAATTCAATTGGGTAAGCTTAAAGTGTTTGATGGAGGAAGTGATTTACTTAGAATTATTAAGCAAACAGATTACAGAGGTTTAAGTGGGAGAATTCAGTTTGGTGAAGACAGAAATGTTGTAAATGGTAGCTATGATGTGATTAATATTAACCAAAGGGAAATTCGTTTGGTGGGTTATTGGTCTAATGACTCAAGATTTCATTCCCACTTAGATCAAAAACTTGAGAACGTGGTTTGGCCTGGTGGGAAGTCAGAAATACCAAGGGGTTGGGTCATTGCAGATGCTGGAAAGCCTCTGAGAATTGCTTTCCCAAAAAGAGCAAGCTTTGTTGATTTCGTAACTCAATTGAACAACTCCAATATAGTTCGAGGATACGTTATTGATATATTCAAAGAAGCTCTCAAGTTTGTTCCATATGAAGTTCCTTACAAATTTGTGCCTTTTGGGGATGGTAGAGTCAATCCAAGTTATGATGAACTTGTTCAGTCAGTTGCAAATAATGTGTTTGATGGAGCTGTTGGGGACATTGCTATTGTTACGAACCGAACAAAGATTGTCGATTTTTCCCAACCGTATACGACTACGGGGCTTATCATAGTTGCACCAGTTAAAGATTCAAAATCAAGTGCTTGGGTGTTTCTTAAACCATTTACAGTGGAGATGTGGTGTGCAACAGCAGGTTCGTTTGTGGTAATTGGGATTGTTATTTGGATGTTAGAACATCGAATCAACGACCATTTTCGAGGTCCTCCGAAAAGGCAGATTGTCACTATGTGTTTATTCAGCTTTTCAACTCTGTTCAAGGCAAATCAAGAAGCAACAATAAGCCCACTTTCTCGATTGGTGATGTTGGTATGGCTGTTCTTATTATTGGTAATAACCTCAAGCTACACAGCAAGTTTGACATCAATCCTTACAATTCAGCAACTTTCTTCTCCAATACGTGGAATTGATGACTTGGTTGCAAGTAATTTGCCAATTGGATATCAAGTAGGATCCTTTGCTTATGACTATCTCACACAAAGCCTTTTCATACCACGTTCCAGACTGGTGAAGCTGGACACCCCTGAAGACTACGAGAAAGCACTGCGCCTTGGCCCAAAAGGAGGAGGTGTGGCAGCCATCATTGATGAACTTCCATATTTGGAGTTGTTTCTGTCTAAGACTAAAGAATTTGGAATGATTGGCCAACCTTTTACAAGGAGTGGATGGGGATTTGCTTTCCAGCGAGGATCTCGACTTGCAGTTGATATGTCAACTGCAATTCTGAGACTCTCGGAGAGCGGGAAACTTCAAGAAATACACGACTTGTGGTTCTGTAAGCTAGGTTGTCCGGGGGATCGGGGAGGAAAGTCAGAGCCAGACCAACTTCAGTTGATCAGTTTCTGGGGTTTGTATTTGCTTTGTGGAATCATTTCCCTTGCTGCACTCTTCCTGTTTCTATTAAGACTAATTCACCAGTATATCCGTTATCAAAGACACCATCAGCGTCGTCGTTCAGAGGAAGTTACACCATTGCCTGTTCCATCGAACACCAGCTGTACTCAGACCATTCAAAACTTTATAGGGTTTATTGACGAGAAGGAAGAAGCCATCAAGAGCTTCTTCCTACATGGTGCTCAAAATGGGAACCAACTCCACAATCATTCCCAAAATGCCAAGGAGAAGGCCGATTCAGAGATACAGCCAGGGACCTCGAGTATGAATCGAGGATAA 2790 41.72 MVNFVALPLLLYTLIWLFQFTGPICCQKPSVVNIGAVFTFNSVIGRAAKPAMEAAISDINADPNILNGIKLNFLMEDSNCSGFLGSVEALQVLEKEIVAMIGPQSSVVAHVISQIVNGLQIPQVSYAATDPTLSTLQLPFFLRTTSSDSYQMTAMADLIDYYGWKEVIAIFLDDDYGRNGISFLGDELQKKMCRISHEFPLPSLTNLTKITQILNDSKLLGPRVYVVHVGPDPQLRIFTIAHKLGMLTSNYVWFATDWLSTTLDSSSPITNGASLDVLNGVVGLRPHTPESKRKRDLWDRLSKTQPKGLTNSVLNVYGLYAYDSVWVVAKAVDKFLKENGNIITFSSTGKVFGSNGSAIQLGKLKVFDGGSDLLRIIKQTDYRGLSGRIQFGEDRNVVNGSYDVININQREIRLVGYWSNDSRFHSHLDQKLENVVWPGGKSEIPRGWVIADAGKPLRIAFPKRASFVDFVTQLNNSNIVRGYVIDIFKEALKFVPYEVPYKFVPFGDGRVNPSYDELVQSVANNVFDGAVGDIAIVTNRTKIVDFSQPYTTTGLIIVAPVKDSKSSAWVFLKPFTVEMWCATAGSFVVIGIVIWMLEHRINDHFRGPPKRQIVTMCLFSFSTLFKANQEATISPLSRLVMLVWLFLLLVITSSYTASLTSILTIQQLSSPIRGIDDLVASNLPIGYQVGSFAYDYLTQSLFIPRSRLVKLDTPEDYEKALRLGPKGGGVAAIIDELPYLELFLSKTKEFGMIGQPFTRSGWGFAFQRGSRLAVDMSTAILRLSESGKLQEIHDLWFCKLGCPGDRGGKSEPDQLQLISFWGLYLLCGIISLAALFLFLLRLIHQYIRYQRHHQRRRSEEVTPLPVPSNTSCTQTIQNFIGFIDEKEEAIKSFFLHGAQNGNQLHNHSQNAKEKADSEIQPGTSSMNRG 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1838873 1844799 - CePI673135_02g001950.1 Cec02g0195 195248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0195 929 CDD PBP1_GABAb_receptor_plant 33 424 IPR044440 -
Cec02g0195 929 PIRSF IGluLR_plant 1 928 IPR017103 -
Cec02g0195 929 Gene3D - 568 700 - -
Cec02g0195 929 Gene3D - 745 804 - -
Cec02g0195 929 Gene3D - 459 567 - -
Cec02g0195 929 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 874 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cec02g0195 929 Gene3D - 51 399 - -
Cec02g0195 929 Gene3D - 147 422 - -
Cec02g0195 929 SUPERFAMILY Periplasmic binding protein-like II 435 797 - -
Cec02g0195 929 MobiDBLite consensus disorder prediction 904 929 - -
Cec02g0195 929 FunFam Glutamate receptor 147 306 - -
Cec02g0195 929 Pfam Receptor family ligand binding region 48 408 IPR001828 -
Cec02g0195 929 SUPERFAMILY Periplasmic binding protein-like I 25 449 IPR028082 -
Cec02g0195 929 SMART GluR_14 456 799 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cec02g0195 929 Pfam Ligand-gated ion channel 798 829 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cec02g0195 929 FunFam Glutamate receptor 694 801 - -
Cec02g0195 929 Pfam Bacterial extracellular solute-binding proteins, family 3 470 576 IPR001638 -
Cec02g0195 929 FunFam Glutamate receptor 568 698 - -
Cec02g0195 929 MobiDBLite consensus disorder prediction 915 929 - -
Cec02g0195 929 CDD GluR_Plant 455 797 - -
Cec02g0195 929 FunFam Glutamate receptor 452 568 - -
Cec02g0195 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Cec02g0195 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 236 259 - -
Cec02g0195 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0195 Cec-Chr2:1838873 Cec02g0898 Cec-Chr2:11363148 4.70E-250 dispersed
Cec02g0919 Cec-Chr2:12031095 Cec02g0195 Cec-Chr2:1838873 0.00E+00 transposed
Cec02g0195 Cec-Chr2:1838873 Cec02g0894 Cec-Chr2:11314900 1.20E-245 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0195 K05387 - csv:101203158 1624.37