Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec02g0230 | ATGGAAGGAGGAGGATCCAGTGGAAGCAGCTGTTCATTCATGGCTACTTGTAACAGCACCAACAACAATAATACTAACACACCCATGATGATGATGATCAATAGTAGTAATAATCCTCAAACGTTGGACAACAACAACAACAACAAGATGTTCTTGCCTTTGTCTTGGTCTTCTACTTCTTCCAACAATAATGCTCAAACTCAAAGGGTTTCTGCTTTTGTTCCTCAATCTAATACCAATAATAATGATCTTCTTACCACTTCCACGTCCAAAGCTAAAATTATGGCTCATCCTCTCTTCCCTCGCCTCCTCGCTGCCTACGTCAACTGCCAAAAGGTGGGTGCGCCGCCGGAAGTGGTGGCGAGGCTAGAGCAGGCGTGTGCCGTGGCGACGGGAAGCTGTAGGGCGGCAGGACGTGGGGATGATCCAGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACCAAATATGAACAAGAGTTGACCAAACCTTTTAAAGAAGCAATGCTCTTCTTCTCAAGAATTGAGTCTCAACTGAAAACCCTAGCAGTTTCTTCTGATGGTTTCGAGTTGGTTGGGCAAAACGAGTGCTCGAAGGAGATTGAGGTGGATATGAACGAAAACTACATAGACCCTCAAGCCGAAGAGAAGGAACTCAAAGGCCAACTTCTACGCAAATACAGCGGATATCTTGGGAGCCTAAAACAAGAGTTTTTGAAGAAGAAAAAGAATGGGAAGTTGCCAAAAGAAGCTAGACAACAATTGCTCGACTGGTGGAGTCGACACTACAAATGGCCATATCCCTCGGAGTCGCAAAAGGTGGCGTTGGCGGAGTCGACGGGGCTAGACTTGAAGCAGATCAATAATTGGTTTATTAACCAAAGAAAGCGCCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTAATGGATGCTGCTCATCCACATTACTATTTGGACAATGTCATATGCAATCCTTTCTCTATGGATTGTTCTTCTACTCTTTTCTGA | 1017 | 44.84 | MEGGGSSGSSCSFMATCNSTNNNNTNTPMMMMINSSNNPQTLDNNNNNKMFLPLSWSSTSSNNNAQTQRVSAFVPQSNTNNNDLLTTSTSKAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGRGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKTLAVSSDGFELVGQNECSKEIEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMDCSSTLF | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2194432 | 2198340 | - | CePI673135_02g002300.1 | Cec02g0230 | 195283 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec02g0230 | 338 | Pfam | Homeobox KN domain | 260 | 299 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cec02g0230 | 338 | ProSiteProfiles | ELK domain profile. | 220 | 240 | IPR005539 | GO:0003677(InterPro) | |
Cec02g0230 | 338 | ProSiteProfiles | 'Homeobox' domain profile. | 240 | 303 | IPR001356 | GO:0003677(InterPro) | |
Cec02g0230 | 338 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 63 | 310 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cec02g0230 | 338 | SUPERFAMILY | Homeodomain-like | 242 | 317 | IPR009057 | - | |
Cec02g0230 | 338 | Pfam | KNOX1 domain | 91 | 128 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cec02g0230 | 338 | SMART | HOX_1 | 242 | 307 | IPR001356 | GO:0003677(InterPro) | |
Cec02g0230 | 338 | Pfam | ELK domain | 220 | 241 | IPR005539 | GO:0003677(InterPro) | |
Cec02g0230 | 338 | SMART | KNOX2_2 | 135 | 186 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cec02g0230 | 338 | FunFam | Homeobox protein knotted-1-like 2 | 245 | 307 | - | - | |
Cec02g0230 | 338 | Pfam | KNOX2 domain | 140 | 184 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cec02g0230 | 338 | CDD | homeodomain | 252 | 304 | IPR001356 | GO:0003677(InterPro) | |
Cec02g0230 | 338 | SMART | KNOX1_2 | 88 | 132 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cec02g0230 | 338 | ProSitePatterns | 'Homeobox' domain signature. | 278 | 301 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cec02g0230 | 338 | Gene3D | - | 245 | 307 | - | - | |
Cec02g0230 | 338 | SMART | ELK_2 | 220 | 241 | IPR005539 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec02g0230 | Cec-Chr2:2194432 | Cec05g1945 | Cec-Chr5:31502954 | 7.50E-73 | dispersed | |
Cec02g0230 | Cec-Chr2:2194432 | Cec04g1874 | Cec-Chr4:37321715 | 1.10E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28980 | PF03791 | KNOX2 | 6.10E-22 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec02g0230 | - | - | - | 0.0 |