Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0230 ATGGAAGGAGGAGGATCCAGTGGAAGCAGCTGTTCATTCATGGCTACTTGTAACAGCACCAACAACAATAATACTAACACACCCATGATGATGATGATCAATAGTAGTAATAATCCTCAAACGTTGGACAACAACAACAACAACAAGATGTTCTTGCCTTTGTCTTGGTCTTCTACTTCTTCCAACAATAATGCTCAAACTCAAAGGGTTTCTGCTTTTGTTCCTCAATCTAATACCAATAATAATGATCTTCTTACCACTTCCACGTCCAAAGCTAAAATTATGGCTCATCCTCTCTTCCCTCGCCTCCTCGCTGCCTACGTCAACTGCCAAAAGGTGGGTGCGCCGCCGGAAGTGGTGGCGAGGCTAGAGCAGGCGTGTGCCGTGGCGACGGGAAGCTGTAGGGCGGCAGGACGTGGGGATGATCCAGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACCAAATATGAACAAGAGTTGACCAAACCTTTTAAAGAAGCAATGCTCTTCTTCTCAAGAATTGAGTCTCAACTGAAAACCCTAGCAGTTTCTTCTGATGGTTTCGAGTTGGTTGGGCAAAACGAGTGCTCGAAGGAGATTGAGGTGGATATGAACGAAAACTACATAGACCCTCAAGCCGAAGAGAAGGAACTCAAAGGCCAACTTCTACGCAAATACAGCGGATATCTTGGGAGCCTAAAACAAGAGTTTTTGAAGAAGAAAAAGAATGGGAAGTTGCCAAAAGAAGCTAGACAACAATTGCTCGACTGGTGGAGTCGACACTACAAATGGCCATATCCCTCGGAGTCGCAAAAGGTGGCGTTGGCGGAGTCGACGGGGCTAGACTTGAAGCAGATCAATAATTGGTTTATTAACCAAAGAAAGCGCCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTAATGGATGCTGCTCATCCACATTACTATTTGGACAATGTCATATGCAATCCTTTCTCTATGGATTGTTCTTCTACTCTTTTCTGA 1017 44.84 MEGGGSSGSSCSFMATCNSTNNNNTNTPMMMMINSSNNPQTLDNNNNNKMFLPLSWSSTSSNNNAQTQRVSAFVPQSNTNNNDLLTTSTSKAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGRGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKTLAVSSDGFELVGQNECSKEIEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMDCSSTLF 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2194432 2198340 - CePI673135_02g002300.1 Cec02g0230 195283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0230 338 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec02g0230 338 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677(InterPro)
Cec02g0230 338 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677(InterPro)
Cec02g0230 338 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 63 310 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec02g0230 338 SUPERFAMILY Homeodomain-like 242 317 IPR009057 -
Cec02g0230 338 Pfam KNOX1 domain 91 128 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec02g0230 338 SMART HOX_1 242 307 IPR001356 GO:0003677(InterPro)
Cec02g0230 338 Pfam ELK domain 220 241 IPR005539 GO:0003677(InterPro)
Cec02g0230 338 SMART KNOX2_2 135 186 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec02g0230 338 FunFam Homeobox protein knotted-1-like 2 245 307 - -
Cec02g0230 338 Pfam KNOX2 domain 140 184 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec02g0230 338 CDD homeodomain 252 304 IPR001356 GO:0003677(InterPro)
Cec02g0230 338 SMART KNOX1_2 88 132 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec02g0230 338 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec02g0230 338 Gene3D - 245 307 - -
Cec02g0230 338 SMART ELK_2 220 241 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0230 Cec-Chr2:2194432 Cec05g1945 Cec-Chr5:31502954 7.50E-73 dispersed
Cec02g0230 Cec-Chr2:2194432 Cec04g1874 Cec-Chr4:37321715 1.10E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28980 PF03791 KNOX2 6.10E-22 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0230 - - - 0.0