Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0249 ATGTCTGAAGAGCAAGCAATTTCAAATGCCTTCATTTGCAGCATCCCATCACTTGGATCCATCAACAACCCTTCTGTTGTCAAGAAGAAGAGGAATCTCCCTGGAAATCCAGATCCCGAAGCGGAAGTTGTGTCGTTGTCGCCTAAGACGCTAATGGCGACGAACCGATTCTTGTGTGAGATATGTGGGAAGGGTTTTCAAAGGGATCAAAACCTACAACTGCATAGGAGAGGGCACAATCTTCCATGGAAGCTAAAGCAAAGAAGCAATGGAAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTACATCACCATCCTTCAAGGGCTCTTGGAGATCTCACAGGAATTAAAAAGCACTTTTGCAGGAAGCATGGGGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGTACCAAAGAGTATAAATGTGACTGTGGGACTCCATTTTCAAGGAGAGATAGCTATGTAACTCACAGAGCATATTCAACAACAACAACAAATTCTGATGTTCTTTCTGTTCCTTCCTTATACAGCAACGAAGAACAACAATCATCCCATCAATTTATGGCTTCATCAGCCAACATGTCAGCTACTGTTTTGCTGCAAAAGGCTGCACAAATTGGAGTGACAACCTCCACAACAGACCCATCATTGATGGAAAGTTTTGGGTTGAAATTCAGTACAATAACTGATGGGAAAGCCTTGTTTTCAGGGCTTTATGGCTCAATAATGAACTCAAACTCCAACATTATTCCTAGTTGTTGTAGCCTTGAAAATGGTGGAGATCATCATCAGGACTCTGAAATATACTCTGCACCAGCAAAGAGAATGAGACACACTGTTAGTGAAGAGAGTGTTACTGGTGGAGAAGGAGAAACAAGGGATTTCTTGGGTGTGGGAATGCACTCCATATGCCATCCATCACCAGTAAATGGATGGATCTGA 1008 42.56 MSEEQAISNAFICSIPSLGSINNPSVVKKKRNLPGNPDPEAEVVSLSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNGNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYSTTTTNSDVLSVPSLYSNEEQQSSHQFMASSANMSATVLLQKAAQIGVTTSTTDPSLMESFGLKFSTITDGKALFSGLYGSIMNSNSNIIPSCCSLENGGDHHQDSEIYSAPAKRMRHTVSEESVTGGEGETRDFLGVGMHSICHPSPVNGWI 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2348681 2351595 + CePI673135_02g002490.1 Cec02g0249 195302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0249 335 Gene3D Classic Zinc Finger 53 80 - -
Cec02g0249 335 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 185 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cec02g0249 335 Gene3D Classic Zinc Finger 113 191 - -
Cec02g0249 335 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 161 182 - -
Cec02g0249 335 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cec02g0249 335 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Cec02g0249 335 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 134 158 - -
Cec02g0249 335 SMART c2h2final6 135 155 IPR013087 -
Cec02g0249 335 SMART c2h2final6 57 79 IPR013087 -
Cec02g0249 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cec02g0249 335 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
Cec02g0249 335 FunFam protein indeterminate-domain 12-like 36 106 - -
Cec02g0249 335 SUPERFAMILY beta-beta-alpha zinc fingers 56 155 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0249 Cec-Chr2:2348681 Cec02g1072 Cec-Chr2:20380393 6.90E-87 dispersed
Cec02g0249 Cec-Chr2:2348681 Cec05g1973 Cec-Chr5:31759727 5.70E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28982 None None None None Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0249 K25870 - csv:101207997 376.711