Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0285 ATGCTCTTTCGGTTTTATAGACCCGTAAAGGATCTGGATGGAGAAAAGGCCAAACCACCAAAGGTTAGATTACTAGGTGGTTTCAAGGTGAAGAGGGCTAAGGAGCATTTCCATGGCCAAGGGTGGAGTAACCTACTTTATATCTTGCCATTTGGTGTAATTTTGATTCTGGGTGTTTGGTATATCTTTAGTCTTTGTGATGGGAGTTCAGTTCGGGAAGTGGAGATTCCAAATACGTTTAAAGAGAAGAGCTGGAACTTTCTGAAGCATTTCAATGTCAGTGAGAGTCAATTTCATGCTTTGGATTCGTTCTTCTTTCATTCAGATCAGACAGCATCTCTCCTCTGTGCTAAAGACTCAGAGCCTGGCAATGCACTGAAAGATTGCATTCCTTGTGCATTGAAGATTTTGGAATGGGAACAAGAATCGCAAAAGAAGCATGGGTGGCTTTCTGAAGATCTACAATCTGAAGGCCAGTGCTCAATTAGGGGTGAGATGGAGTCCTTCAATATTGGTCAATTGCAGTTAGTGGACAAGATACACTCACTTACTTCAAAATCTTCTTTTGCATTTGTGTCTCCCTGTCTTCAGATTCATAAAGAGAGGATCTTGCATACTAGGGAAATTGGAAATGGGCATTCTCGAAGTTTGAATGGATTAGTAATGGCATGCTTATGGATCCTTGCTGTAGTGATATCATGCCTGAAGATGTCTGGTTTTCATTTGAAATTAAAGAACCACATACACAAGCCAATAAAGCATCCATCGGTTGAGAATCAGCCAGTGATTCAGCTACAGCAGGTGTTGCTACAGCAGCAGTTAGATCCATCTTCAAGTCCTCCAAAAGGGGCTGGAAAATGGAGAAAGAAGCTTCTTATAATATTTGTTTTGCTTGGAATTATTGGATCCTTTTGGCTCTTTTGGTATTTGAACAACAAAATCATCTTGAGGAGAGAAGAAACACTTTCTAACATGTGTGATGAGCGAGCTCGAATGTTACAGGATCAATTCAACGTTAGCATGAACCATGTTCACGCCTTGGCTATTCTGGTCTCCACTTTTCATCATGGCAAGCATCCTTCTGCCATTGATCAGAAAACATTCAGTGAATATGCAGAAAGAACAGCTTTTGAACGACCACTAACCAGTGGGGTGGCTTACGCTTTGAAAGTTGATCATTCAGACAGAAAGCAATTTGAAGAGGAACATGGGTGGACAATTAAGAAGATGGGAACAGAGGACCAGACCCTGGTTCAGGATTCTATTCCTGAGAATTTAGACCCTGCTCCCTTTCAGGATGAATATGCACCTGTGATATTTTCACAAGAAACTGTATCTCATATAGTTTCCATCGACATGATGTCTGGAAAGGAAGACCGCGAAAACATCTTGCGAGCGAGGGCTTCAGGGAAGGGAGTGCTGACATCTCCTTTCAAGCTTCTTAAGTCCAATCACCTAGGTGTTGTGCTCACTTTTGCTGTCTATAACGCTGAGCTTCCTCCTGATGCAACACCAGAGCAACGTATTGAAGCTACTGTTGGGTATCTAGGGGCATCCTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTTCTAGCAAACAATCTATTGTTGTTGATGTTTATGACACAACTAATGCATCTGCTCCCATTAAGATGTATGGATCTGATGTAATAGATACTGGTCTATTGCACATTAGCAACCTGGATTTTGGAGACCCTCAAAGGAAGCATGAGATGCATTGCAGATTTAAGCAGAGACCACAATTACCATGGATGGCTATAAATGCATCAGTGGGAGTTCTGGTTATTACTTTACTAGTTGGCCATATATTTTATGCGGCCATAAGTCGAATCGCAAAAGTGGAAAATGACTATGATGAGATGATGAAACTCAAAAGTCGCGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCAACTGTTTCTCACGAGATCAGGACGCCAATGAATGGTGTTTTAGGGATGCTGAAAATGCTGATGGACACTGATCTTGACCCAAACCAACTGGACTGTGCCCAGACTGCATATGATAGTGGGAAAGAATTAATATCACTAATAAATGAGGTTCTTGACCAAGCTAAAATAGAATCAGGCAGGCTTGAACTTGAAGATGTACCATTTGATCCACGAGCTTTACTTGATAATGTGCTGTCAATGTTCTCTGGAAAATGTCATGAGAAGGGAATAGAGTTAGCTGTTTATGTCTCTAATTTGGTCCCTGAAGTTCTCATCGGTGACCCTGGACGCTTCCGGCAGATAATTACCAATCTTGTGGGAAATTCAATCAAGTTCACCAAGGACAAAGGACACATATTTGTTACTGTACACCTGGCAGACGAGGTGAGGACTCCCCTCGAGGCAATGGACAGTGTGCTAAGACAAGGCCTACATTTAGTGAATGAGACGCCGAGAAAAAGTCACAATACATTAAGTGGGTTTCCAGTGGTCGAGAGGTGCAAGAGTTGGGAGTTTTTCGAGATATTTAGAACAGATGTGATGAAAGAAAACGATGAAGTAATTAAGTTGCTTGTATCAGTTGAGGATACGGGTGATGGAATTCCTTTAGATGCACAAAGTCGAATTTTTATGCCTTTTATGCAAGCAGATAGTTCCACTTCACGCAAGTATGGTGGGACTGGAATAGGTCTGAGCATCAGCAAATGTCTGGTGGATCTAATGGGTGGAGAGATAGGTTTTGTGAGCCAACCTGGTGTTGGTAGCACATTTTCATTTACTGGATGTTTGAGAAAAGGCGATACGAGGTCTCTTGAGACAAAGTTGCAGCAGAATGATTCAGCCATGTTAGATTTCCGAGGACTGCGAGCGTTGGTACTGGATGATAGAAGCATTCGAGCTGAGGTAACAAAATATCATCTGAAGAGGTTAGGGATCTCAGTGGACATAGTTTCGAGTCTGGCTTCCGCACATGAATACTTAACTAAGAATTGCATCAAAAGTCCATCCAAGCGTTTGGCCTTGGTGCTTATTGACAAAGACGTATGGGATAAGGAAACCGATCCGACATACCCTCGCGTGTTTAAAGAACATGGGGTAAATGGGAAGGAAGAATGGAGAGGAAGTCCTAAGATCTTTCTCTTAGCCACCTCCATTAGCCCTCAAGAGACTAGAGCTCTCAAGTCGGCTGGTTATGTTGATAATGTAATGACAAAACCCCTTAGGTCAGGTGTCCTGATTGGATGTTTCCAGGAAGCTTTCGGAAAGGTCAACCGAAAGAAACCGTCTATTCTGGGGAACTTACTGAGAGAAAAGCAGATATTGGTGGTTGATGACAATGCAGTCAATAGACGAGTTGCCGAAGGTGCTCTAAAGAAATATGGAGCAAAGGTTACCTGTGTGGAAAGTGGTGGCGCTGCTATTTCATTGTTAAAACCACCACACAAGTTCAATGCTTGCTTCATGGATCTTCAAATGCCTGAGATGGATGGGTTTGAAGCAACACGGCAGATACGAAATAACGAAAATAAGGTTAATGAGGATATTGCTTCCGGGAAAGCATCAATTGAGATGTTTGGGAATGTGGCTCATTGGCATACACCCGTGTTGGCCATGACAGCTGATGTGATTCAGGCTACAAATGAAGCATGCATGAATTGTGGGATGGATGGTTATGTAGCAAAGCCTTTCGAAGAAGAAAAATTATATTCAGCAGTCGCTCGGATCGAGATTGACTCTAATAATATGAGTTTTCCTCTGATGAAAGGCCCTACCAGGACAAGGCATCAAGTAGAATCATTCGGAATACGTCCTGATCTTTACAGTTGGCCAGACACAAAGGTGTACAATCCGGTCAAAATCTGGGGTTCTTGTTGTTCATTCACTGATTGTTCTCTTACTTGCTCTAGTGGCTGGCAAACGCCAACCGAGAGGGGAGAACGAATGGCTCAGGAATCGACTGGTTCTGAGCGGACTCATGGAGCTGCTGCTTGGATTATCGATAGCACGATCGAGTCGCTTCATCCACCTTTGTTCATCTTGCAAAGTCATCAGCCGTTTGCTCTACTATTTCATCACCTGAGAATAACTGACATCTCAGCTGCAAGATTGGATGATCTAGTTGAAATGAAATTCCGTTTTCGCACATAA 4137 42.71 MLFRFYRPVKDLDGEKAKPPKVRLLGGFKVKRAKEHFHGQGWSNLLYILPFGVILILGVWYIFSLCDGSSVREVEIPNTFKEKSWNFLKHFNVSESQFHALDSFFFHSDQTASLLCAKDSEPGNALKDCIPCALKILEWEQESQKKHGWLSEDLQSEGQCSIRGEMESFNIGQLQLVDKIHSLTSKSSFAFVSPCLQIHKERILHTREIGNGHSRSLNGLVMACLWILAVVISCLKMSGFHLKLKNHIHKPIKHPSVENQPVIQLQQVLLQQQLDPSSSPPKGAGKWRKKLLIIFVLLGIIGSFWLFWYLNNKIILRREETLSNMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKTFSEYAERTAFERPLTSGVAYALKVDHSDRKQFEEEHGWTIKKMGTEDQTLVQDSIPENLDPAPFQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNAELPPDATPEQRIEATVGYLGASYDVPSLVDKLLHQLSSKQSIVVDVYDTTNASAPIKMYGSDVIDTGLLHISNLDFGDPQRKHEMHCRFKQRPQLPWMAINASVGVLVITLLVGHIFYAAISRIAKVENDYDEMMKLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDPNQLDCAQTAYDSGKELISLINEVLDQAKIESGRLELEDVPFDPRALLDNVLSMFSGKCHEKGIELAVYVSNLVPEVLIGDPGRFRQIITNLVGNSIKFTKDKGHIFVTVHLADEVRTPLEAMDSVLRQGLHLVNETPRKSHNTLSGFPVVERCKSWEFFEIFRTDVMKENDEVIKLLVSVEDTGDGIPLDAQSRIFMPFMQADSSTSRKYGGTGIGLSISKCLVDLMGGEIGFVSQPGVGSTFSFTGCLRKGDTRSLETKLQQNDSAMLDFRGLRALVLDDRSIRAEVTKYHLKRLGISVDIVSSLASAHEYLTKNCIKSPSKRLALVLIDKDVWDKETDPTYPRVFKEHGVNGKEEWRGSPKIFLLATSISPQETRALKSAGYVDNVMTKPLRSGVLIGCFQEAFGKVNRKKPSILGNLLREKQILVVDDNAVNRRVAEGALKKYGAKVTCVESGGAAISLLKPPHKFNACFMDLQMPEMDGFEATRQIRNNENKVNEDIASGKASIEMFGNVAHWHTPVLAMTADVIQATNEACMNCGMDGYVAKPFEEEKLYSAVARIEIDSNNMSFPLMKGPTRTRHQVESFGIRPDLYSWPDTKVYNPVKIWGSCCSFTDCSLTCSSGWQTPTERGERMAQESTGSERTHGAAAWIIDSTIESLHPPLFILQSHQPFALLFHHLRITDISAARLDDLVEMKFRFRT 1378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2629811 2641620 - CePI673135_02g002850.1 Cec02g0285 195338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0285 1378 Gene3D - 616 707 - -
Cec02g0285 1378 ProSiteProfiles Response regulatory domain profile. 1102 1239 IPR001789 GO:0000160(InterPro)
Cec02g0285 1378 PANTHER TWO-COMPONENT HISTIDINE KINASE 285 1237 IPR050956 -
Cec02g0285 1378 PRINTS Bacterial sensor protein C-terminal signature 853 867 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cec02g0285 1378 PRINTS Bacterial sensor protein C-terminal signature 912 925 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cec02g0285 1378 PRINTS Bacterial sensor protein C-terminal signature 888 906 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cec02g0285 1378 PRINTS Bacterial sensor protein C-terminal signature 871 881 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cec02g0285 1378 SMART HisKA_10 644 709 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec02g0285 1378 Gene3D - 708 928 IPR036890 -
Cec02g0285 1378 SMART CHASE_2 359 558 IPR006189 -
Cec02g0285 1378 ProSiteProfiles CHASE domain profile. 359 583 IPR006189 -
Cec02g0285 1378 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 852 923 IPR003594 -
Cec02g0285 1378 Pfam Response regulator receiver domain 1103 1187 IPR001789 GO:0000160(InterPro)
Cec02g0285 1378 SUPERFAMILY CheY-like 947 1083 IPR011006 -
Cec02g0285 1378 FunFam Histidine kinase 4 363 590 - -
Cec02g0285 1378 CDD HATPase_EvgS-ArcB-TorS-like 761 926 - -
Cec02g0285 1378 Gene3D - 310 362 - -
Cec02g0285 1378 Coils Coil 621 641 - -
Cec02g0285 1378 Gene3D - 945 1088 - -
Cec02g0285 1378 Gene3D - 1096 1241 - -
Cec02g0285 1378 FunFam Histidine kinase 4 616 707 - -
Cec02g0285 1378 Pfam CHASE domain 362 556 IPR006189 -
Cec02g0285 1378 CDD HisKA 644 705 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec02g0285 1378 ProSiteProfiles Histidine kinase domain profile. 651 928 IPR005467 -
Cec02g0285 1378 CDD REC_hyHK_CKI1_RcsC-like 1103 1235 - -
Cec02g0285 1378 Pfam His Kinase A (phospho-acceptor) domain 644 709 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec02g0285 1378 ProSiteProfiles Response regulatory domain profile. 952 1083 IPR001789 GO:0000160(InterPro)
Cec02g0285 1378 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 698 923 IPR036890 -
Cec02g0285 1378 Gene3D CHASE domain 363 590 IPR042240 -
Cec02g0285 1378 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 630 710 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec02g0285 1378 SMART REC_2 1101 1235 IPR001789 GO:0000160(InterPro)
Cec02g0285 1378 SUPERFAMILY CheY-like 1099 1237 IPR011006 -
Cec02g0285 1378 SMART HKATPase_4 756 928 IPR003594 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0285 Cec-Chr2:2629811 Cec10g0064 Cec-Chr10:664815 1.40E-40 dispersed
Cec01g0676 Cec-Chr1:7406921 Cec02g0285 Cec-Chr2:2629811 4.70E-276 transposed
Cec02g1577 Cec-Chr2:33357165 Cec02g0285 Cec-Chr2:2629811 4.80E-28 transposed
Cec05g1770 Cec-Chr5:29453913 Cec02g0285 Cec-Chr2:2629811 8.20E-43 transposed
Cec06g0223 Cec-Chr6:2381343 Cec02g0285 Cec-Chr2:2629811 1.30E-304 transposed
Cec09g0543 Cec-Chr9:4662691 Cec02g0285 Cec-Chr2:2629811 7.40E-27 transposed
Cec11g0114 Cec-Chr11:1363374 Cec02g0285 Cec-Chr2:2629811 5.30E-276 transposed
Cec11g1049 Cec-Chr11:19734052 Cec02g0285 Cec-Chr2:2629811 1.10E-08 transposed
Cec02g0285 Cec-Chr2:2629811 Cec02g0970 Cec-Chr2:13922414 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28985 PF03924 CHASE 9.10E-36 CL0165 Cec TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0285 K14489 - vvi:100263145 1518.06