Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0317 ATGGGTTACATTTGTGATTTCTGTGGGCAACAAAGGTCGATTGTGTACTGCCGATCCGATGCTGCAGCTTTGTGCTTGTCTTGTGACCGAAATGTTCACTCTGCCAACGCCTTGTCAAAGCGTCACTCGAGAACATTGTTATGTGATCGGTGCCATTCACAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGACTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCTCGAAAGAGGCAACCAATCAATTGTTACTCAGGCTGCCCGACAGCTGCAGAGCTCTCATCTATCTGGTCATTTGTTTTAGATCTCACTTCTGGAAGTGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCAGTAAATGCTTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCTGGTGTAGATGAAGCCAATGAATTCTCAAGTGTGGATAAATCAATTTGGTATGGGTCCTCTTCAATGCCTCACATTATGGACCAACCCATTACTAGAGATGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAACTCGAAATTGAATATGACCTTTACGAGACTTTGAATATGGATGAAGATAGTTTGAATATTGAAAACTATGAAGAACTATTTGGTGTATCTCTTAGTTATTCTGAAGAACTGCTAGAGAATGGTGGTATTGATAGTTTGTTCAGGTTGAAGAGCTTATCTGCCGCTAAATCTGGTTGCCCTGGTGCGGCTGCTGCAGAGGGGGCGTCAGGTGGCTTTGTTAATAATGTGATGCAGCCTGCAAGCAGTAATGCAGCATCGGCAGATTCTGTGATGAGTTCGAAGACTGAACCGGTTCTTTGTTATAACAATATGCAAGAGCACTCCAGCCTATCATTTTCTGGCATGACTGGAGAGAGTAGTGCAGGAGAACATCCAGACTGTGGAGCTTCATCAATGCTCCTAATGGGAGAACCTCCATGGTGTTCTATGACCACTGAGAGTTCCTTCCAGTCATCTAATCGTACCGATGCTGTATTCCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTTAGGGCCGATACTCGAAGACGTGTCAAGGGACGCTTTGTCAAAGCTGGAGAAGCTTATGACTATGATCCTTTGAGTCAAACCAGAAGCTACTGA 1224 43.87 MGYICDFCGQQRSIVYCRSDAAALCLSCDRNVHSANALSKRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLTSGSDACEQELGLMSIAENSAVNAWGPDDKAGQNVSGVDEANEFSSVDKSIWYGSSSMPHIMDQPITRDATSPKLHYPGTKGPELEIEYDLYETLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRLKSLSAAKSGCPGAAAAEGASGGFVNNVMQPASSNAASADSVMSSKTEPVLCYNNMQEHSSLSFSGMTGESSAGEHPDCGASSMLLMGEPPWCSMTTESSFQSSNRTDAVFRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLSQTRSY 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2900842 2904473 - CePI673135_02g003170.1 Cec02g0317 195370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0317 407 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Cec02g0317 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 397 - -
Cec02g0317 407 Pfam CCT motif 350 392 IPR010402 GO:0005515(InterPro)
Cec02g0317 407 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cec02g0317 407 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cec02g0317 407 ProSiteProfiles CCT domain profile. 350 392 IPR010402 GO:0005515(InterPro)
Cec02g0317 407 CDD Bbox1_BBX-like 4 47 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0317 Cec-Chr2:2900842 Cec02g1139 Cec-Chr2:25996311 3.60E-122 dispersed
Cec11g1217 Cec-Chr11:25476764 Cec02g0317 Cec-Chr2:2900842 1.00E-05 dispersed
Cec02g0317 Cec-Chr2:2900842 Cec11g1272 Cec-Chr11:26687121 2.30E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28988 PF06203 CCT 5.00E-15 CL0281 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0317 - - - 0.0