Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0339 ATGGCTGCCTTTGTAGCTATAATAGTCTTCTATTTGGTTCTTCTGCAAACACCCACCAACATATTTGCGGTTAAGGATGAAGAAGAGTGGAAATCTGCTACTGCAACATACTCCAAAGAAACAGATGGGTCAATTGTTACAGAAGGTGCTTGTGGTTATGGAGATCTGCATAAGATAAGCTATGGAAAATATAGCGCTGGACTGAGTAGCATGTTGTTTAATAGAGGGAGTACCTGTGGAGCTTGCTATGAGCTTAGATGTGTTGACCACATCTTGTGGTGCTTGCAAGGAAGCCCGACTGTCATTCTAACGGCCACCGACTTCTGTCCTCCAAATTACGGCTTCTCTTCCGATTATGGTGGTTGGTGTAATTTTCCCAAGGAACACTTTGAGATGTCAGAGGCAGCGTTTGCTGAAATAGCAGAGAAAAAAGCAGATATTGTGCCAGTTCAATATAGGAGGGTGAGGTGTGACAGAAGTGGTGGAATGAGATTCACAGTTAGTGGGAATTCTCGCTTCTTTCAAGTGCTGATTACAAATGTTGGAATGGATGGTGAATTAGTGGCAGTCAAAGTAAAAGGATCAAGAACAGGATGGATACCACTGGCAAGAAACTGGGGACAAAACTGGCAAAGCAATGTCAATCTTCATGGACAACCTCTCTCTTTCGAAGTTACCTCCAGCAGTGGAAGAGCACTTACTTCCTACAGCGTTGCACCTGGAAACTGGCAGTTTGGGCAGACATTTGAAGGGAAACAATTTTGA 765 43.66 MAAFVAIIVFYLVLLQTPTNIFAVKDEEEWKSATATYSKETDGSIVTEGACGYGDLHKISYGKYSAGLSSMLFNRGSTCGACYELRCVDHILWCLQGSPTVILTATDFCPPNYGFSSDYGGWCNFPKEHFEMSEAAFAEIAEKKADIVPVQYRRVRCDRSGGMRFTVSGNSRFFQVLITNVGMDGELVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYSVAPGNWQFGQTFEGKQF 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3145323 3146861 - CePI673135_02g003390.1 Cec02g0339 195392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0339 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576(InterPro)
Cec02g0339 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576(InterPro)
Cec02g0339 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576(InterPro)
Cec02g0339 254 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576(InterPro)
Cec02g0339 254 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576(InterPro)
Cec02g0339 254 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576(InterPro)
Cec02g0339 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664(InterPro)
Cec02g0339 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664(InterPro)
Cec02g0339 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664(InterPro)
Cec02g0339 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664(InterPro)
Cec02g0339 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664(InterPro)
Cec02g0339 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664(InterPro)
Cec02g0339 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664(InterPro)
Cec02g0339 254 PRINTS Expansin signature 60 74 IPR002963 GO:0009664(InterPro)
Cec02g0339 254 PRINTS Expansin signature 87 98 IPR002963 GO:0009664(InterPro)
Cec02g0339 254 PANTHER EXPANSIN-A15 5 254 IPR002963 GO:0009664(InterPro)
Cec02g0339 254 Gene3D - 16 158 IPR036908 -
Cec02g0339 254 SMART dpbb_1 65 152 IPR007112 -
Cec02g0339 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Cec02g0339 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Cec02g0339 254 Pfam Lytic transglycolase 66 152 IPR009009 -
Cec02g0339 254 FunFam Expansin 162 254 - -
Cec02g0339 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 162 IPR007112 -
Cec02g0339 254 CDD DPBB_EXPA_N 29 157 - -
Cec02g0339 254 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Cec02g0339 254 SUPERFAMILY Barwin-like endoglucanases 29 180 IPR036908 -
Cec02g0339 254 Gene3D - 162 252 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0339 Cec-Chr2:3145323 Cec07g0569 Cec-Chr7:7096549 6.70E-74 dispersed
Cec02g0339 Cec-Chr2:3145323 Cec07g0374 Cec-Chr7:3761518 3.00E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0339 - - - 0.0