Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0364 ATGGCTTCTAGAAGCTTTGTTGCTCTTCTTCTAGTCCTTGTCTTGGTAGCTGATTCGGCTACGACAGGGCATCATTCATTCCAAATCCATACTTTTTCTTCTCGCTTTTTAATCTGCGGTTTTCGTTATCGTTTCGGGGTTTTCGATGTTTCTTCTGGGATAGGCGAGCACCGGGTTGATGGCGTTGGTGAAGAAGGAGGAGTTAGTGTTACAGTTAACATTCGATGTTCTAATGGGTCGAAATTTTCGGTGACGACGAGTCTAGATTTCACGGTTGGGACATTCAAATCAATTCTTGCTCAGAATTGTGATATTCCAGCTGATCAACAGCGCTTGATCTACAAGGGTCGCATCCTAAAGGACGATCAGACCTTAGTTAGTTATGGTTTACAGGCAGATCACACGATTCACATGGTTCGTGGTTTTGCCCAAGCTTCATCAACACCTCCTGCGCCTGCTTCTAATGTTAATAGTAGAAGTTCTGACACTGCTCCTGGTGTCACAAGAGGTGTTGGTTCTAATGAGAGTGGTGCTTTTGGAAATGCTGGCCTTGGTGCATCATTATTTCCTGGATTGGGTTTCAATCCTCTCGGTGGGGGTGGAGCTGGACTTCCTGAGTTTGAGCAAGTGCAACAACAGTTGACTCAGAATCCAAACATGATGAGGGAAATAATGAACATGCCTGCAATTCAGAACTTGATGAATAACCCTGACTTGATGCGAACCTTAATTATGAGCAATCCTCAGATGCGGGATATTATTGACAGGAACCCAGAGCTTGCTCATATACTCAATGACCCTGGAATCCTTCGACAGACATTAGAGGCTGCAAGGAATCCTGAACTCATGAGAGAGATGATGAGAAACACTGACAGAGCAATGAGTAACATCGAATCTTCTCCAGAGGGATTTAACATGCTGAGGCGGATGTATGAAAATGTTCAGGAGCCATTTCTAAATGCAACAACAATGGCTGGAAATGCTGGAAATGATTTGAGTTCAAACCCATTTGCTGCTCTCTTGGCAAACCAAGGGGGCGCACAAGCGAGGAATGAGTCCAATAATTCTTCAACTACAGGATCAGAAACAACAGGAACTGCTGCTCCGAATACAAATCCACTTCCTAATCCGTGGGGTAATAGTGCTAGTGGAGGAACTCAGACCACAACCACACAGCCTACTCCAGCAGGTGATGCAAGGGCTCCTGGTATTGGGGCTTTAGGAGGGGCTGGTCGTACAAATGTGGATCGATTTGCTGGTGCTGTGCCAGACCCGGCTCAGCTGAACCAGTTTCTGCAAAACCCGGCTATTTCACAGATGATGCAGAGCCTACTCTCCAACCCTCAGTATATGAATCAAATCCTCAATCTCAACCCACAGCTACGAAGTATGGTTGATATGAATCCTCAATTAAGAGAGATGATGCAAAATCCAGAGTTTGTTCGCCAATTAACTAATCCTGAGATGATGCAGCAAATGCTATCGATCCAGCAGACCCTCCTCTCTACCTTAAATCGGCATCCATCATCTCAAGATTCTGCTCAAACAGGTGCTGCTGCAGGTGTTCCTAGCACTGCTGGATTGGAGATGTTAATGAACCTCTTTGGTGGGCTCGGTGCTGGTGGGTTGGCTGTTCCGAACAATCCCAACGTGCCCCCAGAAGAACTATACGCAACTCAACTCTCACAGCTCCAAGAGATGGGTTTCTTTGACACCCAAGAGAACATCAGAGCTCTACGTGCTACTTCCGGGAACGTTCATGCCGCTGTCGAGCGACTGCTGGGAAATCTCGGGCAGTAA 1800 46.39 MASRSFVALLLVLVLVADSATTGHHSFQIHTFSSRFLICGFRYRFGVFDVSSGIGEHRVDGVGEEGGVSVTVNIRCSNGSKFSVTTSLDFTVGTFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRGFAQASSTPPAPASNVNSRSSDTAPGVTRGVGSNESGAFGNAGLGASLFPGLGFNPLGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDLSSNPFAALLANQGGAQARNESNNSSTTGSETTGTAAPNTNPLPNPWGNSASGGTQTTTTQPTPAGDARAPGIGALGGAGRTNVDRFAGAVPDPAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNPQLRSMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSIQQTLLSTLNRHPSSQDSAQTGAAAGVPSTAGLEMLMNLFGGLGAGGLAVPNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3376534 3384948 + CePI673135_02g003640.1 Cec02g0364 195417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0364 599 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 552 596 IPR015940 -
Cec02g0364 599 SMART ubq_7 70 141 IPR000626 GO:0005515(InterPro)
Cec02g0364 599 Pfam Ubiquitin family 72 140 IPR000626 GO:0005515(InterPro)
Cec02g0364 599 Gene3D - 539 598 - -
Cec02g0364 599 CDD UBA_PLICs 557 595 - -
Cec02g0364 599 MobiDBLite consensus disorder prediction 147 170 - -
Cec02g0364 599 SMART uba_6 557 595 IPR015940 -
Cec02g0364 599 ProSiteProfiles Ubiquitin domain profile. 70 139 IPR000626 GO:0005515(InterPro)
Cec02g0364 599 FunFam Ubiquitin domain-containing protein DSK2b 67 154 - -
Cec02g0364 599 PANTHER UBIQUILIN 67 595 IPR015496 GO:0005829(PANTHER)|GO:0006511(PANTHER)|GO:0031593(PANTHER)
Cec02g0364 599 Pfam UBA/TS-N domain 557 593 IPR015940 -
Cec02g0364 599 SUPERFAMILY UBA-like 553 595 IPR009060 GO:0005515(InterPro)
Cec02g0364 599 Gene3D - 68 153 - -
Cec02g0364 599 Gene3D - 242 300 - -
Cec02g0364 599 MobiDBLite consensus disorder prediction 344 410 - -
Cec02g0364 599 MobiDBLite consensus disorder prediction 344 396 - -
Cec02g0364 599 SMART CBM 458 493 IPR006636 -
Cec02g0364 599 SMART CBM 247 286 IPR006636 -
Cec02g0364 599 SMART CBM 195 234 IPR006636 -
Cec02g0364 599 SMART CBM 425 454 IPR006636 -
Cec02g0364 599 FunFam Ubiquitin domain-containing protein DSK2b 244 300 - -
Cec02g0364 599 CDD Ubl_Dsk2p_like 70 142 - -
Cec02g0364 599 FunFam Ubiquitin domain-containing protein DSK2b 540 598 - -
Cec02g0364 599 SUPERFAMILY Ubiquitin-like 69 156 IPR029071 -
Cec02g0364 599 MobiDBLite consensus disorder prediction 144 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0364 K04523 - - csv:101210644 913.294
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0364 Cec-Chr2:3376534 Cec10g0031 Cec-Chr10:394309 3.50E-158 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39