Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0378 ATGGCTTGGTTTCTTAGCTTTCTCTTTCTCTTTTTCATCTCTTCTGCTAATGCTTGTGATCGATGTGTTTTCCAATCTAAAGCTAGTCACCTTTATGAATCACCCACTACATATGGGGGAGCATGTGGCTATGGCAACTTGGCATTGCAGTTCTCCAATGGCTTCTTTGCAGCTGCTGTGCCTTCTCTTTACAAACAAGGAGCTGGTTGTGGGGCTTGCTATCAAGTAAGGTGCAAAAATAGAAGGCTTTGCAATACAGTAGGAACTAAGGTGGTATTGACAGATCAAAACAATGACAATGTAACAGACCTTGTTCTTAGTCCAAAGGCTTTCTTTACCATGGCTCTCAATGGTAAAGGTTCAGATCTTTTGAATCTTGGGGTGGTTGATGTTGAATATAAGAGGGTGGCATGTGAATATCCAAATAGAAATTTGTTGGTGAGAGTGGAAGAATCAAGTTACAACCCATTCAAGTTAGCAATTAAATATTTGTACCAAGGTGGTCAAACAGACATGATTGCTGTTGATATAGCTCAAGTTGGAACCTCAGATTGGAGCCATATGAAGAGAAGTTATGGAGCTGTTTGGGAAACAGACAATGTACCTGAAGGTGCATTACAATTGAGAATGGTGGTAACTTCTGGCTATGACGGCAAATGGGTTTGGGCAAAGTCCGTACTTCCTGCTAATTGGAGAGCTGGGGCGATCTACGATACTGGAGTCCAAATCAACGATGTTGCCAAAGAGAGTTGCCCTCCTTGGCAATGTGCTAATGCTTGTGATCGTTGTATTTTTCAATCTAAGGCCGCTCATTACTATGAGGATACACCTACTTCATATGGAGGTGCATGTGGGTATGAAAATTTGGCCTTGGAAATGTCTCGAGGCTATTTTGCAGCTGCTGTCCCTTCTCTCTACCGACAAGGAATGGGTTGTGGTGCCTGCTACCAGGTAAGATGCAAGAATGCAACATTGTGTAACACAATGGGGACCAAAGTAGTTTTGACAGATCAAAATTCTGATAACCGAACAGATTTTGTTCTTAGTAAAAAAGCTTTTTCTACAATGGCTTTAAAGGGCAAAGGCCAAGAACTTTTGAAAACTGGAATTGTTGCTATTGAATACAAGAGGATACCTTGTGAATACAATAAAAATTTATTAATACAAGTAGTAGAATGGAGCCACAAACCATATTATTTGGCTATTAAATTCCTCTACCAAGGAGGTCAAACCGACATAACTGCGGTCAACATAGCAGCTCAGGATGGTTCTGGAGAGTGGCAATACATGAAAAGAAACTATGGAGCCATTTGGGATACAAATAAAGTGCCAGAAGGGGCAATTAAGTTAGTGGTGATTGTAGTTTCAGGGTACAAGAATGGGAGAGGGATCATGATGAGTTATGCACTTCCTAGTGATTGGAAAAATGGAGAAATTTATGATACTGGAATTCAAATCAAAGATATTGCTTCTGAAGCTTGCAATCCTTGGCAATGTGGTGACCAACCATGGAAATGA 1518 40.71 MAWFLSFLFLFFISSANACDRCVFQSKASHLYESPTTYGGACGYGNLALQFSNGFFAAAVPSLYKQGAGCGACYQVRCKNRRLCNTVGTKVVLTDQNNDNVTDLVLSPKAFFTMALNGKGSDLLNLGVVDVEYKRVACEYPNRNLLVRVEESSYNPFKLAIKYLYQGGQTDMIAVDIAQVGTSDWSHMKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWVWAKSVLPANWRAGAIYDTGVQINDVAKESCPPWQCANACDRCIFQSKAAHYYEDTPTSYGGACGYENLALEMSRGYFAAAVPSLYRQGMGCGACYQVRCKNATLCNTMGTKVVLTDQNSDNRTDFVLSKKAFSTMALKGKGQELLKTGIVAIEYKRIPCEYNKNLLIQVVEWSHKPYYLAIKFLYQGGQTDITAVNIAAQDGSGEWQYMKRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMMSYALPSDWKNGEIYDTGIQIKDIASEACNPWQCGDQPWK 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3570387 3577845 - CePI673135_02g003780.1 Cec02g0378 195431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0378 505 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 398 482 IPR007117 -
Cec02g0378 505 Pfam Lytic transglycolase 58 133 IPR009009 -
Cec02g0378 505 Pfam Lytic transglycolase 300 374 IPR009009 -
Cec02g0378 505 PANTHER EXPANSIN-B3 8 245 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cec02g0378 505 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Cec02g0378 505 Pfam Expansin C-terminal domain 147 228 IPR007117 -
Cec02g0378 505 Pfam Expansin C-terminal domain 395 457 IPR007117 -
Cec02g0378 505 Gene3D - 140 244 IPR036749 -
Cec02g0378 505 Gene3D - 382 487 IPR036749 -
Cec02g0378 505 SUPERFAMILY Barwin-like endoglucanases 11 142 IPR036908 -
Cec02g0378 505 SMART dpbb_1 299 375 IPR007112 -
Cec02g0378 505 SMART dpbb_1 57 133 IPR007112 -
Cec02g0378 505 Gene3D - 14 139 IPR036908 -
Cec02g0378 505 Gene3D - 250 381 IPR036908 -
Cec02g0378 505 SUPERFAMILY Barwin-like endoglucanases 259 384 IPR036908 -
Cec02g0378 505 CDD DPBB_EXLA_N 257 382 - -
Cec02g0378 505 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Cec02g0378 505 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576(InterPro)
Cec02g0378 505 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
Cec02g0378 505 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576(InterPro)
Cec02g0378 505 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Cec02g0378 505 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Cec02g0378 505 SUPERFAMILY PHL pollen allergen 143 238 IPR036749 -
Cec02g0378 505 SUPERFAMILY PHL pollen allergen 391 481 IPR036749 -
Cec02g0378 505 CDD DPBB_EXLA_N 16 140 - -
Cec02g0378 505 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 281 385 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0378 Cec-Chr2:3570387 Cec02g0383 Cec-Chr2:3608344 6.60E-166 dispersed
Cec02g0377 Cec-Chr2:3564123 Cec02g0378 Cec-Chr2:3570387 6.70E-138 tandem
Cec02g0378 Cec-Chr2:3570387 Cec02g0379 Cec-Chr2:3587377 4.40E-93 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0378 - - - 0.0