Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0379 ATGTATTATTGGTTCCTCACCTTCCTCTTCTTGCTCGTCTCCTCTACTACGGCTTCTTTTCCTCCTTATGGAGGTGCTTGTGGTTATGCAAATTTAGCATTGCAAATCTCTCAAGGCTACTTTGCAGCTGCTGTCCCTTCCCTTTATAAGGGAGGAGCAGGTTGTGGCGCTTGCTACCAGGTAAGATGCAAGGACAAACATCTATGCAATACTGCAGGGACTAAAATAGTTTTGACAGATCAAAATAATGATAATAGAACAGATATTGTTCTTAGTAAGAAAGCTTTCTCTGCAATGACTTTAAGAGGAAAAGCTCAACAACTTTTGAATACTGGAATACAAGAGGTGATCCGATACGAGATACCTTGTGAATACAAAAATAAAAATCTATTGGTACAAGTGGTAGAATGGAGCCACAAACCATACTATTTGGCAATCAAATTCCTATATCAAGGAGGTCAAACAGACATACAAGCGGTTAACATAGCTCAGGTCGGTTTACCAAAATGGCGCCCTATGAAAAGAAATTATGGACCTATTTGGGATATTAATAGTGTGCCTGAAGGAGGATTACAATTGAGAATGGTAGTAAGTTCAAGATATGATAATGGAAAATGGATTTGGGCAGGTTTTGTGATCCCAGCTGATTGGAAAAATGGTGAAATTTATGATACTGGAGTTCAAATTAATGATATTGCTTTTGAATATTGCCCTCCTTGGCAATGTGATGATGGACAATGGAAATAA 747 38.29 MYYWFLTFLFLLVSSTTASFPPYGGACGYANLALQISQGYFAAAVPSLYKGGAGCGACYQVRCKDKHLCNTAGTKIVLTDQNNDNRTDIVLSKKAFSAMTLRGKAQQLLNTGIQEVIRYEIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRPMKRNYGPIWDINSVPEGGLQLRMVVSSRYDNGKWIWAGFVIPADWKNGEIYDTGVQINDIAFEYCPPWQCDDGQWK 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3587377 3588820 - CePI673135_02g003790.1 Cec02g0379 195432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0379 248 Pfam Expansin C-terminal domain 139 214 IPR007117 -
Cec02g0379 248 Gene3D - 13 124 IPR036908 -
Cec02g0379 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 142 225 IPR007117 -
Cec02g0379 248 Pfam Lytic transglycolase 43 102 IPR009009 -
Cec02g0379 248 SUPERFAMILY PHL pollen allergen 135 224 IPR036749 -
Cec02g0379 248 Gene3D - 125 230 IPR036749 -
Cec02g0379 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 24 128 IPR007112 -
Cec02g0379 248 SUPERFAMILY Barwin-like endoglucanases 16 127 IPR036908 -
Cec02g0379 248 PANTHER EXPANSIN-B3 16 231 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cec02g0379 248 PRINTS Expansin/Lol pI family signature 170 184 IPR007118 GO:0005576(InterPro)
Cec02g0379 248 PRINTS Expansin/Lol pI family signature 23 41 IPR007118 GO:0005576(InterPro)
Cec02g0379 248 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576(InterPro)
Cec02g0379 248 PRINTS Expansin/Lol pI family signature 111 127 IPR007118 GO:0005576(InterPro)
Cec02g0379 248 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0379 Cec-Chr2:3587377 Cec02g0383 Cec-Chr2:3608344 6.70E-87 dispersed
Cec02g0378 Cec-Chr2:3570387 Cec02g0379 Cec-Chr2:3587377 4.40E-93 tandem
Cec02g0379 Cec-Chr2:3587377 Cec02g0380 Cec-Chr2:3592391 2.50E-89 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0379 - - - 0.0