Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0380 ATGGCTTGGTTCCTTAGCTTATTCTTCTTCTTCCTCATCTCTTCTGCTACTGCTTGCGATCGTTGTATTCACCGATCCAAAGCTACTCATTATTATGGAGATTCACCTACTTCATATGGAGGAGCATGTGGGTATGGAGACTTGGCTTTGGAATTTACCAATGGCTACTTTTCAGCTGCTGTGCCTTCTCTCTACAAACAAGGAGCTGGTTGTGGTGCATGTTTTCAGGTAAGATGTAAAGACAAAAGACTATGCAATACAGCAGGGACCAAAGTAGTATTGACAGATCAAAATTATGATACAAGAGCAGATTTTGTTCTAAGTAGAAAGGCTTTTTCAGCCATGGCTTTGAAAGGAAAAGGTCAACAACTTTTGAATACTGGGATTGTTGATGTAGAATACAAGAGGATACCTTGTGGATACAAAAACAAAAATTTGGCCGTACGAGTTGAAGAATCAAGTTATAATCCAAATTATTTAGCCATTAAACTTTTGTACCAAGGTGGCCAAACAGAGATAGTGGCTGTCGAGATAGCTGAGGTTGGTTCATACGAATGGGTGAGCTTAAGCAGAAACTATGGAGCAGTTTGGGATACGAATAAAGTACCCAAAGGAGCATTACAAATAAGAATGGCATTTACTTCAGGATACGATGGAAAATGGGTTTGGGCAGAATATGTTCTTCCTGTTGATTGGAAAATTGGAGCCATTTACGATACTGGAGTTCAAATTTATGATATTGCTAAAGAGGGTTGCCTTGCATCACAGTGTGGTGATAAACCATGGAAATAA 792 39.27 MAWFLSLFFFFLISSATACDRCIHRSKATHYYGDSPTSYGGACGYGDLALEFTNGYFSAAVPSLYKQGAGCGACFQVRCKDKRLCNTAGTKVVLTDQNYDTRADFVLSRKAFSAMALKGKGQQLLNTGIVDVEYKRIPCGYKNKNLAVRVEESSYNPNYLAIKLLYQGGQTEIVAVEIAEVGSYEWVSLSRNYGAVWDTNKVPKGALQIRMAFTSGYDGKWVWAEYVLPVDWKIGAIYDTGVQIYDIAKEGCLASQCGDKPWK 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3592391 3594947 - CePI673135_02g003800.1 Cec02g0380 195433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0380 263 CDD DPBB_EXLA_N 16 141 - -
Cec02g0380 263 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Cec02g0380 263 Gene3D - 141 245 IPR036749 -
Cec02g0380 263 Pfam Lytic transglycolase 59 134 IPR009009 -
Cec02g0380 263 Gene3D - 12 139 IPR036908 -
Cec02g0380 263 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Cec02g0380 263 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Cec02g0380 263 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Cec02g0380 263 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576(InterPro)
Cec02g0380 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Cec02g0380 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
Cec02g0380 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Cec02g0380 263 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
Cec02g0380 263 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cec02g0380 263 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cec02g0380 263 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cec02g0380 263 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cec02g0380 263 PANTHER EXPANSIN-B3 7 246 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cec02g0380 263 Pfam Expansin C-terminal domain 147 229 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0376 Cec-Chr2:3554540 Cec02g0380 Cec-Chr2:3592391 1.10E-98 dispersed
Cec02g0377 Cec-Chr2:3564123 Cec02g0380 Cec-Chr2:3592391 8.30E-112 dispersed
Cec02g0380 Cec-Chr2:3592391 Cec02g0383 Cec-Chr2:3608344 1.90E-100 dispersed
Cec02g0379 Cec-Chr2:3587377 Cec02g0380 Cec-Chr2:3592391 2.50E-89 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0380 - - - 0.0