Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0406 ATGGATACGCTTAAGAACTCCTTCAACGGTAATGTATCTTTCAAGCATACCAGGAAGATTTCTGCTGGCGTAGCTGGTAGCGAAATTAATCACGAGGAGCTCCCCATTCTTCTCAATCGCGAACCTACGGGTCATCGTCGCCGTCTTAGGGATCGTCATCCGGTGAACGATTCTGATCCATCTGACCGAACAGAGGTCATTCTCAAGATCGACGATGGCGGTTCTTCGGCTGTTTCCAGACATCAGGACCCTGCCGGCAATAATGGCGAGAAGGTTTGGCGGGAATCCAGGTGCGATTTCTGGAACAATGATGCAATTGGAATTGGGGAAAGTGCAAATAGGGTTAGTGGTGTTGATAGAAATGAGGGATTTGAATTTGTACAGCCTGGTTATGGTATGGAGGATCCACCAACGAAGCTGATTGGTGAGTTTCTTCATAAGCAGAAAATTGGGGGAGAAACGACTTTGGATATGGATTTAGAAATGGAGGAGTTGAGGCCTGATAGGATTATACCTCCATTGGCAGAATCGCCGTTGAGTCAGACTTCTAAGGATCTTAAAGTTTCATTCCAGCAGGATTCGACAGAAATTTCGAGCAATGATCAGTCGATGAGAAGGCGGTATAGAGATTCTCGCGACTTTCAGGAAGAGTATAAAGGAGGACAACCGCCATGGCAGCACTCGCATCATGAACGTCTTGGATCTCCGACTATCTCTGGGGTTCAGAATGAGTCTGTTGCTGAGGCTATGAGGTGCGCATCTAACTTGTCTTTTCATAGTGAGCTTTCGTTTCAAAGGAAATCTCATTTGCTTAGGGCGAAAACCAAGTCAAGATTGATAGACCCGCCGGCAGAGCCAGACCGGCTCTCTGGCCTTATTCCTAAATCAGGACAACTACGATCTGGGTTTATCGGCAAGCTTGACGACGACGATGACGATCCCTTTCTGGAGGAGGACCTTCCAGACGAATTTAAAAGGGGAAATTTCAATGCTCTAACTGTGCTGCAATGGGTCAGTTTGATTTTAATCACCGCGGCTTTAGTTTGCACTCTTTCTATTCCTTATTTGAGGGAAAAGAGCCTATGGGAGTTGGATATATGGAAATGGGAGGTAATGATTTTGATACTGATTTGTGGACGATTGGTATCTGGTTGGGGGATTAGGATCGTAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAAAGGGTTCTGTATTTTGTATATGGGGTTAGAAAGCCAGTGCAGAGTTGTCTATGGTTAGGCCTTGTTCTGATCGCTTGGCATTTGTTGTTCAATAGGCGGGTTGAGAAACAAACCAACACTAGTATACTCAATTATGTGAGGAGAGTTTTAGTGTGTCTCTTGATAAGCACATTGATATGGCTTGTGAAAACCTTGATGGTGAAGGTGCTTGCATCTTCTTTCCATGTAAGCACATACTTCGATCGAATTCAAGAATCGTTGTTTAACCAATATGTCATTGAGACGCTCTCAGGGCCACCCCTTATTGAAATACGGAAGAATGAGGAAGAAGATGAGAGGATTGCAGATGAAGTCCAAAAATTACAGAATGCTGGAATTAACATACCCCCTGATCTCAAGGCAGCAACCTTCGCTTCTGTAAAGAGTGGAAGGGTAATAGGTAGTGGACGGACTCACAAAAGTTTTTGTGCAAAAAGTACAAAATTTTCTCGAGCACTTACCAAAAATGGGAACGATGGAATAACGATTGACCACTTGCACAAACTAAGTCCGAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGATGAGCAGATACCGGGGCCATATCTTGATGATGAATCTACTACAGAGATCAAAAGTGAACGCGAGGCAAAGGCTGCAGCAAAGAAGATTTTTCAGAACGTGGCTCGGCGTGGATATAAGTACATATACCTGGATGACTTAATGCGGTTCATGAGAAAAGATGAGGTTTTCAAAACGATGAGTCTCTTTGAAGGAGCAACTGAAAACCGGAGGATAAGCAAATCTGCTTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTGGATAAACTGCACCATATGGTGAATGTCATATTCGGCATCCTTATATTAATTTTATGGCTTATAGTTCTAGGAATTGCCTCCAGCAAATTTTTCGTCTTCATTAGTTCTCAAATAGTGGTCGTGGCATTTATTTTTGGAAATACTTGCAAAACCATATTTGAAGCAATCATCTTTTTGTTTGTCATGCATCCATTTGACGTTGGAGATCGCTGTGAAATCGATGGAACGCAGATGATTGTAGAGGAAATGAACATCTTGACTACTGTATTCTTGAGATATGACAACTTGAAGATTATAATCCCAAATAGTGTTCTTGCAACCAAATTAATCTACAACTTCTACCGTAGTCCTGAAATGGGCGAATCAGTTGAATTCTCTGTCCATATAGCTACTCCAGCTGAGAAAATTACAGCCATGAAACAGAGAATCATAAGTTACATTGAAGGCAACAAAGAACATTGGTGTCCTTCCCCTATGATTGTGTTCAAGGATATCGATGGTTTAAATATGCTCAAATTGGCAGTTTGGTTGTCACACAGAATGAACCACCAAGACTCGGGGGAAAGATGGGCTCGGAGGTCCATCTTGGTCGAAGAAGTCGTTAAAATCTGTCAAGAGCTCGACATTCAATACCGTCTATTGCCCATCGATATCAATATCCGTTCACTGTCTTCTTCTGCACCCTTCATTGGCTTTCCATCTAATTTGACTTCCTCTGCAAGTTGA 2859 42.57 MDTLKNSFNGNVSFKHTRKISAGVAGSEINHEELPILLNREPTGHRRRLRDRHPVNDSDPSDRTEVILKIDDGGSSAVSRHQDPAGNNGEKVWRESRCDFWNNDAIGIGESANRVSGVDRNEGFEFVQPGYGMEDPPTKLIGEFLHKQKIGGETTLDMDLEMEELRPDRIIPPLAESPLSQTSKDLKVSFQQDSTEISSNDQSMRRRYRDSRDFQEEYKGGQPPWQHSHHERLGSPTISGVQNESVAEAMRCASNLSFHSELSFQRKSHLLRAKTKSRLIDPPAEPDRLSGLIPKSGQLRSGFIGKLDDDDDDPFLEEDLPDEFKRGNFNALTVLQWVSLILITAALVCTLSIPYLREKSLWELDIWKWEVMILILICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGVRKPVQSCLWLGLVLIAWHLLFNRRVEKQTNTSILNYVRRVLVCLLISTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIEIRKNEEEDERIADEVQKLQNAGINIPPDLKAATFASVKSGRVIGSGRTHKSFCAKSTKFSRALTKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRYGSISTLDEQIPGPYLDDESTTEIKSEREAKAAAKKIFQNVARRGYKYIYLDDLMRFMRKDEVFKTMSLFEGATENRRISKSALKNWVVNAFRERRALALTLNDTKTAVDKLHHMVNVIFGILILILWLIVLGIASSKFFVFISSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGTQMIVEEMNILTTVFLRYDNLKIIIPNSVLATKLIYNFYRSPEMGESVEFSVHIATPAEKITAMKQRIISYIEGNKEHWCPSPMIVFKDIDGLNMLKLAVWLSHRMNHQDSGERWARRSILVEEVVKICQELDIQYRLLPIDINIRSLSSSAPFIGFPSNLTSSAS 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3832231 3836132 + CePI673135_02g004060.1 Cec02g0406 195459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0406 952 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 50 935 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Cec02g0406 952 MobiDBLite consensus disorder prediction 173 232 - -
Cec02g0406 952 PIRSF Memb_At2g17000 51 951 IPR016688 -
Cec02g0406 952 SUPERFAMILY Sm-like ribonucleoproteins 765 824 IPR010920 -
Cec02g0406 952 Gene3D - 775 824 IPR023408 -
Cec02g0406 952 MobiDBLite consensus disorder prediction 200 217 - -
Cec02g0406 952 Coils Coil 506 526 - -
Cec02g0406 952 MobiDBLite consensus disorder prediction 176 199 - -
Cec02g0406 952 FunFam Predicted mechanosensitive ion channel 775 824 - -
Cec02g0406 952 Pfam Mechanosensitive ion channel, beta-domain 768 824 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0406 Cec-Chr2:3832231 Cec02g1160 Cec-Chr2:27111127 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0406 K22048 - csv:101207426 1655.96