Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0471 ATGGGTTTCCGTTTGCCCCGAATTGTTACTGCTAAGCAAAGTCTCCAGCGATTTTCATCAACAGGAAATGGAACATCTCCAAAAGCTGTTGACGTTCCCAAGGGCTATTTTACTGTTTATGTTGGTGAGGAACAAAAGAAGCGTTTTGTCATCCCACTGTCTTACTTGAACCAGCCTTCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATAATCATCCAATGGGTGGCATCACAATTCCTTGCCGTGAAGACGAGTTCCTCAATCTCACTCAGAGTTTGAATGGCTCGTGA 303 42.57 MGFRLPRIVTAKQSLQRFSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGGITIPCREDEFLNLTQSLNGS 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4379069 4379371 + CePI673135_02g004710.1 Cec02g0471 195524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0471 100 Pfam Auxin responsive protein 16 96 IPR003676 GO:0009733(InterPro)
Cec02g0471 100 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 96 IPR003676 GO:0009733(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0471 K14488 - - csv:105436057 184.496
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0464 Cec-Chr2:4348268 Cec02g0471 Cec-Chr2:4379069 1.30E-30 dispersed
Cec02g0471 Cec-Chr2:4379069 Cec02g0474 Cec-Chr2:4385853 2.50E-48 dispersed
Cec02g0470 Cec-Chr2:4377059 Cec02g0471 Cec-Chr2:4379069 2.90E-41 tandem
Cec02g0471 Cec-Chr2:4379069 Cec02g0472 Cec-Chr2:4382433 4.80E-44 tandem
Cec11g0399 Cec-Chr11:4108759 Cec02g0471 Cec-Chr2:4379069 2.70E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g78 . . . . . . . . . Cmo11g01712 . . . . . . . Bhi05g01760 . . . . . . Cla02g00465 Cam02g0471 Cec02g0471 . Clacu02g0474 Cmu02g0469 Cre02g0802 . . . . . Csa07g00062 . . . . Bda15g01053 . . . . Bma08g00771 . . . Cma11g01408 . . . . . . . . . . . . . . . . . . . Lsi11g01164 Csa02g01335 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213