Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0472 ATGGGTTTCCGTTTGCCTAGAATTGTTACTGCTAAGCCAAGCCTTCAGCAATCTTCATCAACAGGAAATGGAGCATCTCCAAAGGCTATCAATGTACCAAAGGGATACTTTACAGTTTATGTTGGTGAGGTACAAAAGAAGCGTTTTGTCATCGCACTATCATACTTGAACCAGCCGTCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATAATCATCCAATGGGTGCCATCACAATTCCTTGCAGTGAAAACTATTTCCTTGATCTCACTCGGAGTTTGAATGATTCATGA 303 39.93 MGFRLPRIVTAKPSLQQSSSTGNGASPKAINVPKGYFTVYVGEVQKKRFVIALSYLNQPSFQDLLSQAEEEFGYNHPMGAITIPCSENYFLDLTRSLNDS 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4382433 4382735 + CePI673135_02g004720.1 Cec02g0472 195525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0472 100 MobiDBLite consensus disorder prediction 1 29 - -
Cec02g0472 100 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 96 IPR003676 GO:0009733(InterPro)
Cec02g0472 100 MobiDBLite consensus disorder prediction 11 27 - -
Cec02g0472 100 Pfam Auxin responsive protein 18 97 IPR003676 GO:0009733(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0472 K14488 - - csv:105436057 184.111
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0472 Cec-Chr2:4382433 Cec02g0474 Cec-Chr2:4385853 2.50E-48 dispersed
Cec02g0471 Cec-Chr2:4379069 Cec02g0472 Cec-Chr2:4382433 4.80E-44 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g75 . . . . . . . . Cmo19g00724 . . Cma20g00780 . . . . . Bhi05g01762 Tan02g0722 Cmetu01g0683 . . . . Cla02g00466 Cam02g0473 Cec02g0472 . Clacu02g0476 Cmu02g0471 Cre02g0803 . . . . Lsi10g00451 Csa07g00060 Chy11g00312 Cme01g01303 . . . Bda14g00596 . . . . Sed05g3572 . . . . . . . . Bhi10g01910 Tan05g1209 Cmetu02g0248 . . . . . . . . . . . Lsi11g01163 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213