Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0497 ATGTACCTTTTCTTCGTCTGCACTTCACAAATCTTCGTTCTTCAGCGGCTGTTCTCCCGCGAATCTCATCCCGTTGCAGCTTCATTCGTAATTTTGCATCTTCAGCCATTTGAGCTTCGGCAACATCGGCCACAAGCACATAGCCGTTGGCTGTGGAGTGCTCGGAGTTCCTTGGTTGCTGTGCTGATAGCAGGAGTCAAAGCAGGAGCAGAAGCAGGAGCCCACTGGATCGTAAGATCCGGTCTGATCGTTTTTCATATCGTGATGCACCATACAGGAGAGAATCACGTCGGGGTTTCAGTCGAGACAATCTTTGCAAGAACTGTAAGCGGCCTGGCCATTTTGCAAGAGAATGCCCCAATGTGGCAATTTGTCACAATTGTGGTCTCCCTGGAATGCACAACAAAGTCACTATGTTGGAACTGTCGAGAGCCTGGTCACATGGCAAGTAGCTGTCCCAATGAAGGCATTTGCCACACCTGTGGCAAGGCGGGACATCGGGCCAGGGATTGCACGGCGCCTCCGCTGCCACCTGGGGACTTGAGGCTTTGCAATAATTGCTACAAGCAAGGTCATATAGCAGCTGATTGTACTAACGAGAAGGCATGCAACAATTGCAGGAAGACGGGCCATCTTGCTCGCGATTGTCCAAATGACCCTATTTGCAACCTGTGTAATGTATCAGGGCATGTGGCCAGACAGTGTCCAAAGTCCAACGTCCTTGGAGACCGGGGAGACCGAGGCATCGGCAGTGGTGGTGGTAGTGTACGTGGTGGTGGTAGTGGTTACCGGGACGTTGTGTGCAGGAACTGCCAGCAGCTTGGCCATATGAGTAGGGATTGCATGGGCCCTTTGATGATCTGCCATAACTGCGGGGGACGTGGTCACCTGGCATACGAATGTCCTTCTGGTCGGTTTATGGACCGTTATCCTAGGAGGAAGATGCTAGGCTGGATGGACTGTGGGGCTACTCAGTCAGACAACCATAGGAGTGCTCCAGAAAATGCACCTCGAGGTGCTGCCGAGGAACTAGGGGACCTTCTCAAGCACAGGATAGGCAATTGA 1065 52.39 MYLFFVCTSQIFVLQRLFSRESHPVAASFVILHLQPFELRQHRPQAHSRWLWSARSSLVAVLIAGVKAGAEAGAHWIVRSGLIVFHIVMHHTGENHVGVSVETIFARTVSGLAILQENAPMWQFVTIVVSLECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGGSGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRKMLGWMDCGATQSDNHRSAPENAPRGAAEELGDLLKHRIGN 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4631764 4637306 + CePI673135_02g004970.1 Cec02g0497 195550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0497 354 Pfam Zinc knuckle 221 237 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 Pfam Zinc knuckle 157 172 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 Pfam Zinc knuckle 139 154 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 Pfam Zinc knuckle 183 199 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 Pfam Zinc knuckle 267 281 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 Pfam Zinc knuckle 287 303 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 Pfam Zinc knuckle 202 218 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 ProSiteProfiles Zinc finger CCHC-type profile. 158 171 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 PANTHER - 130 309 - -
Cec02g0497 354 SMART c2hcfinal6 221 237 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 SMART c2hcfinal6 157 173 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 SMART c2hcfinal6 183 199 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 SMART c2hcfinal6 287 303 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 SMART c2hcfinal6 202 218 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 SMART c2hcfinal6 138 154 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 SMART c2hcfinal6 267 283 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 ProSiteProfiles Zinc finger CCHC-type profile. 184 199 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 ProSiteProfiles Zinc finger CCHC-type profile. 139 154 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 ProSiteProfiles Zinc finger CCHC-type profile. 203 218 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 SUPERFAMILY Retrovirus zinc finger-like domains 136 174 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 ProSiteProfiles Zinc finger CCHC-type profile. 268 281 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 SUPERFAMILY Retrovirus zinc finger-like domains 259 305 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 ProSiteProfiles Zinc finger CCHC-type profile. 222 237 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 Gene3D - 131 175 - -
Cec02g0497 354 ProSiteProfiles Zinc finger CCHC-type profile. 288 303 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 SUPERFAMILY Retrovirus zinc finger-like domains 179 219 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cec02g0497 354 Gene3D - 180 220 - -
Cec02g0497 354 Gene3D - 221 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0497 K09250 - - csv:101213305 377.096
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g39 . . . . . Bpe12g00094 . . Cmo19g00702 . . . . . . Cpe04g00102 Cpe15g00562 Bhi05g01259 . . . . . . Cla02g00487 Cam02g0496 Cec02g0497 Cco02g0502 Clacu02g0500 Cmu02g0495 Cre02g0828 . . . . . Csa07g00035 . Cme01g01346 Blo04g00539 Blo13g00534 Bda15g01066 Bda14g00579 Bpe15g00842 . Bma03g00573 Bma08g00782 . . . . Cma19g00691 . . . . . . . . . . . . . . . . . . . . Chy01g00746 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004531 3 4 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42