Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0502 ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGTTATGCTGATGAAGCTGCTCTTTGCCATGGTTGCGACCTCCATGTTCATCGCGCTAATAAGCTCGCTGGAAAACACTCTCGATTCTCTTTACTTCACCCGATCAAAAAGGATTCTCCTCGTTGCGATATCTGTCAGGAACGGCGCGCGCTTGTATTCTGTCAACAAGATAGGGCAATTCTTTGCAGAGAATGCGACATTTCGATTCACGAAGCGAACGAACATACACAGAAGCACAATCGATTTCTTCTTACCGGTGTGAAGCTTTCTTCGACTTGTTATTCGTATCAAACATCTTCGTCCTCCAATGGCTGTGATGCCGCCATGGATGTTAAAACTGGAAGCTCCAACGCTTGCAGCAAAAGACCTAAAATGGCCGCGAACGAAATCTCCAGCTCTCATTCCGCTGAAAAAGCTACTCCGTCGACAAGTAATTACAAGGTTGAAGACGGCCAAGCATTAAGCGACGGCGGTTCGTTCTCGACAAGCAGCATATCGGAATATTTAGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTTGATCCTTCCGCCGCTGCCAATCGTTTCTGTAAGTTTAATGGCGAAATTCTTGGATTTGGGAATCAAAATCTGGAAAGGCAACAAGAATCACTAAGCACTCTCAAGAACACCTTGGAAATTTTAGGTAAAAATTCTCAAATTATTACTACTAGGTGTTGGAATGGAATACTTGGGATCTCCATGAAAACTTGTAAAGATGAAAAAATGCAACAGTGGGTGATCTGA 816 44.24 MKIRCDVCDQAEASVFCYADEAALCHGCDLHVHRANKLAGKHSRFSLLHPIKKDSPRCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHNRFLLTGVKLSSTCYSYQTSSSSNGCDAAMDVKTGSSNACSKRPKMAANEISSSHSAEKATPSTSNYKVEDGQALSDGGSFSTSSISEYLETLPGWCVEEFLDPSAAANRFCKFNGEILGFGNQNLERQQESLSTLKNTLEILGKNSQIITTRCWNGILGISMKTCKDEKMQQWVI 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4689833 4690929 - CePI673135_02g005020.1 Cec02g0502 195555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0502 271 CDD Bbox1_BBX-like 58 100 IPR049808 -
Cec02g0502 271 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Cec02g0502 271 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270(InterPro)
Cec02g0502 271 Coils Coil 218 241 - -
Cec02g0502 271 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cec02g0502 271 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Cec02g0502 271 MobiDBLite consensus disorder prediction 145 164 - -
Cec02g0502 271 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 218 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cec02g0502 271 FunFam B-box zinc finger protein 21 1 98 - -
Cec02g0502 271 Gene3D Classic Zinc Finger 1 99 - -
Cec02g0502 271 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cec02g0502 271 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cec02g0502 271 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0502 Cec-Chr2:4689833 Cec09g1443 Cec-Chr9:21344998 1.40E-34 dispersed
Cec11g0420 Cec-Chr11:4393937 Cec02g0502 Cec-Chr2:4689833 5.30E-44 wgd
Cec02g0502 Cec-Chr2:4689833 Cec08g1502 Cec-Chr8:26751415 4.80E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29003 PF00643 zf-B_box 3.30E-07 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0502 - - - 0.0