Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec02g0506 | ATGGAGGCCATTTCTGGATCATCATCTTCTTCTTCTTCTTTGGAATTCGTGTTTTATGATGATTTTGAATACGAATTTGTTGAAGATATCGAACGTCTTTCGAACTGGGAGTTGCTCGATGCTTTTGATGCCGATTCAGAAATGGACGGAAATGGAGGCGAAGAACAAGGGGAAAACTGCAGCGTTGACCCTAGAGTTCATGAAGATCTTCGAGAGATGATTTCTCCTGTTCTCGCGGTGCCGATTTCGCTTGTGGAGGATCGAATCGACGGTTCTTTGGAAGACGGTTTTGCGTACGGTTATAACGATGCGCAGGAGGAGGATGAAACCGATGATCATGATGATCATGATGAGTTCGATTTGGATGACGAACTCGTTCCGTGGTCTGTCAGTGATAAACTCGGACGGCAGAGGATGAGGAAATTGGGGAAAAGAGGTTTTACGAAGATGTATAATTCGAAGAGATCTCCGTTTTTGTTCACAAAGCCTGGATGTGTCCGCGGCAAGCACGGGCTCGGCTTGAAACACATCACCGTCTTCATCCCGCCGAATTTCTCTGCTTCTCCACCAGCAATGCCGTCCGATTCCTCTCCAGTTAACTTCAATACAGGTCCTTCGTCGCCTGATGATTCATTCTCTAGTCCCATTGGAAACACCGTCTCCTCCTCTGGGGACGGTTATCGCCGTCGAAGCCGTCGTCGGTCATCTACTCCGTCGGAAATGGCTACGCCGCCGCGTCAACGAGCCCGAATGGTCTCGTCGGAAACCACACCGACGGCTAAGGAACCGCGCTCGCGCCGGCGAGGTGGTGGGCGGAGAGCGTCGGGTAGTGAAGCGCCTCCTGTGGCTGCTACACCTTCTTCGACGGATGATATTCCGCCATCGACGGAACCTGGCGACGGCGATGACATGGATGAGGACCATCCGACTTTTGTATGGGGGACGAATATTAGTGTTGACGATGTAAAGGGAGCTATTATTCGGTTTTTGAGGCATTTCCGCGATCGTCAGGCGTCGCAGTCTGAGGGGGATTTTCATACTGAGGGAAAATACGCGGAGGTAATCAAGCGGGTTCTTGAAATTGAAGGGGATTCGCTCGATGTGGATGCGCAGGATTTGTTCAATTACGATACGGATTTATACACGAAGATGGTGAGGTACCCTCTCGAGGTTCTCGCAATTTTTGATATCGTTCTGATGGAAATGGTGCCCCAAATCAACCCATTGTTCGAAAAACACATTCAAACTCGGATATTCAATCTCAAAACTTCTACTTCAATGAGAAATCTTAACCCATCTGACATTGAGAGGATGGTATCACTGAAAGGAATGATTATACGGTGTAGTTCGATAATTCCTGAGATCAGGGAGGCGATATTTAGATGTCTCGTATGTGGATACTACACTGACCCTGTAGCTATTGAGAGAGGACGAATAACTGAGCCCACTATATGCTTGAAGGAAGAATGCCAAGCAAGGAACTCCATGACATTGGTTCACAATCGATGCAGGTTTGCTGATAAGCAGATTGTGCGGCTTCAGGAGACTCCTGATGAGATACCTGAAGGAGGGACGCCTCATACTGTAAGCTTGCTAATGCATGACAGGCTGGTTGATACTGGAAAGCCTGGTGACAGGGTTGAGGTCACTGGGATTTACAGGGCTATGAGTGTGAGAGTTGGACCAACCCAGAGAACTGTAAAATCACTGTTCAAGACTTATATCGACTGTCTTCATATAAAGAAGACTGATAAATCAAGAATGGTGGCAGAAGACCTGACTGAAGCTGAGAACCGGTTGGGTGGAAATGTGGATGATCTCTCATTTGATGAAGCAAAGGTGGAAAAGTTGAAAGAACTCTCCAAAAAGCCTGATATATATGACAGACTGACCAGATCATTGGCTCCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTTGGTGGGAATGCTTTGAAATTGGCAACTGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTCGTTGGTGATCCTGGAACCAGCAAATCTCAGCTTCTCCAATACATACATAAACTATCTCCCCGTGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACAGCTTATGTCACTAAAGATCCTGAAACAGGGGAAACGGTACTGGAGAGCGGAGCCTTGGTTTTGAGTGACAGGGGCATATGTTGCATTGATGAATTTGATAAAATGTCTGAAAATGCAAGGAGCATGTTGCACGAGGTGATGGAGCAACAAACTGTTTCAATAGCAAAGGCTGGAATTATTGCTTCCCTTAATGCTAGGACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAACCCTCGCCTGTCTGTGATTGATAACATACACCTTCCTCCTACTTTGTTATCAAGGTTTGACTTGATTTATTTAATTCTGGATAAAGCTGATGAGCAAACAGATAGGCGCCTTGCTAAGCATATTGTCTCACTACACTTTGACAACCCAGAGGGCATTGAGCAGGATTTCTTGGACCTTCATACCTTGACTTCATATGTCAGCTATGCTAGGAAGAACATTCACCCAAAATTGTCAGACGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGCTGAGGAGGAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTCATTACAGCTACCCCCAGACAGATAGAGAGTTTAATACGTCTAAGCGAAGCCCTTGCTCGAATCCGTTTCTCAGAATGGGTTGAAAAGGGCGACGTTCTCGAGTCATTCCGGCTTCTAGAAGTTGCAATGCAACAATCTGCAACAGATCATTCTACAGGAACTATTGACATGGATCTGATCACCACGGGAGTATCGGCAAGCGAAAGGATGCGAAGGGAGAGTTTATTATCGGCAACTCGCAACATTATTATGGAGAAAATGCAGCTGGGAGGACCCTCCATGCGCCTGGCAGAGTTGCTGGATGAGCTGAAGAAGAAAAATCCTGACAATGAAGTCCATCTCAACAACCTTAGAAACGCGGTAGCAACACTTGCAAGTGAGGGATTTGTAGCGATCCATGGTGATAACGTAAAGAGAATATGA | 3111 | 46.32 | MEAISGSSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDPRVHEDLREMISPVLAVPISLVEDRIDGSLEDGFAYGYNDAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHITVFIPPNFSASPPAMPSDSSPVNFNTGPSSPDDSFSSPIGNTVSSSGDGYRRRSRRRSSTPSEMATPPRQRARMVSSETTPTAKEPRSRRRGGGRRASGSEAPPVAATPSSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRDRQASQSEGDFHTEGKYAEVIKRVLEIEGDSLDVDAQDLFNYDTDLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLKTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYTDPVAIERGRITEPTICLKEECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDRLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMVAEDLTEAENRLGGNVDDLSFDEAKVEKLKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGNALKLATGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPEGIEQDFLDLHTLTSYVSYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKGDVLESFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLLSATRNIIMEKMQLGGPSMRLAELLDELKKKNPDNEVHLNNLRNAVATLASEGFVAIHGDNVKRI | 1036 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 4723559 | 4733673 | + | CePI673135_02g005060.1 | Cec02g0506 | 195559 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec02g0506 | 1036 | Gene3D | - | 945 | 1027 | IPR036388 | - | |
| Cec02g0506 | 1036 | MobiDBLite | consensus disorder prediction | 190 | 225 | - | - | |
| Cec02g0506 | 1036 | ProSiteProfiles | MCM family domain profile. | 626 | 832 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec02g0506 | 1036 | MobiDBLite | consensus disorder prediction | 237 | 259 | - | - | |
| Cec02g0506 | 1036 | MobiDBLite | consensus disorder prediction | 189 | 309 | - | - | |
| Cec02g0506 | 1036 | Pfam | MCM OB domain | 427 | 556 | IPR033762 | - | |
| Cec02g0506 | 1036 | SUPERFAMILY | Nucleic acid-binding proteins | 343 | 577 | IPR012340 | - | |
| Cec02g0506 | 1036 | FunFam | DNA helicase | 607 | 945 | - | - | |
| Cec02g0506 | 1036 | CDD | MCM4 | 629 | 938 | - | - | |
| Cec02g0506 | 1036 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 642 | 653 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cec02g0506 | 1036 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 500 | 512 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cec02g0506 | 1036 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 449 | 462 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cec02g0506 | 1036 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 788 | 805 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cec02g0506 | 1036 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 940 | 949 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cec02g0506 | 1036 | Gene3D | - | 316 | 421 | - | - | |
| Cec02g0506 | 1036 | Gene3D | - | 604 | 944 | IPR027417 | - | |
| Cec02g0506 | 1036 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 727 | 741 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec02g0506 | 1036 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 779 | 791 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec02g0506 | 1036 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 755 | 768 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec02g0506 | 1036 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 806 | 814 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec02g0506 | 1036 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 667 | 682 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec02g0506 | 1036 | Gene3D | - | 454 | 506 | - | - | |
| Cec02g0506 | 1036 | Pfam | MCM N-terminal domain | 326 | 420 | IPR027925 | - | |
| Cec02g0506 | 1036 | SMART | mcm | 423 | 940 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec02g0506 | 1036 | Pfam | MCM P-loop domain | 614 | 836 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec02g0506 | 1036 | Pfam | MCM AAA-lid domain | 852 | 938 | IPR041562 | - | |
| Cec02g0506 | 1036 | FunFam | DNA helicase | 454 | 506 | - | - | |
| Cec02g0506 | 1036 | Gene3D | - | 427 | 566 | IPR012340 | - | |
| Cec02g0506 | 1036 | ProSitePatterns | MCM family signature. | 735 | 743 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Cec02g0506 | 1036 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 637 | 952 | IPR027417 | - | |
| Cec02g0506 | 1036 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 315 | 1010 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec02g0506 | Cec-Chr2:4723559 | Cec04g2312 | Cec-Chr4:40701561 | 3.80E-99 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec02g0506 | K02212 | - | csv:101211850 | 1573.14 |