Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0510 ATGTTCCGTAGCTGTGGGAGTCCGCTCTTCGCTTATCGACCTATGTTCGCCGCGCCTCCCCCGCTCAGTCGTTGGTCGCTGATTGTCGGTCGCACATTCAACATAGCGTTCGGACTCATGTGCCTTCCAGAACCAGGGGTCTTTGAGCCTGCTGCAAAGCTTTCAAGCAGCCATATGGGGAAGAACAAGAAACGTAAGGACGGCGGCGAGAAGGGAGCCGCCGCCGGCGACCACTGCCCTTCCAAGGTCTTCGTGAAGAACTTGCCGTACTCGTTCACCAACTCACAGCTTGAAGAAACATTCAGTGATGTTGGTCCGGTCCGGCGGTGCTTCATGATTACTCAAAAGGGTTCAACTGAGCATCGCGGTTTTGGATTCGTGCAGTTTGCTGTAGCTGAAGATGCAAATCGAGCAATTGAGCTGAAGAATGGGATGTCTGTTGAAGGACGCAAAATTACTGTTAAACATGCTATGCATCGAGCTCCCCTTGAGCAGCGGCGGTCTAAAGAAAATCAAGCTACTGCATCTAAGTCAACAATTAACGAGGAAGGAGATACTTCTAAAAGGGAAGAGCAAACAATTAATGAGGATAGAGATACTTCTAAAAGTGAAGAACAAACAACTAACGAGGATAGAGATACTTCTGAAAAGGCAGAACAAACAACTTCAAATTCCGAGGGGAAAGAGAGACATTTGAATGCTCGGAAATTAGGTTCACTTTCTAGTTATCTAGAGGATAAAGAGGGTCATTCAGGAAAGCAAAGGATTGCAAGGACTGTTGTATTCGGTGGTCTTCTTAATGCTGACATGGCTGAAGATGTTCACCGCCAAGCAAGAGATGTTGGCGACATATGCTCTATTGTTTATCCTCTTCCCAGAAAAGAAGTTGAACAACATGGTCTTTTACGAGATGGATGCAAAATGGATGTTTCAGCTGTACTTTTTGCTAGTGTGAAGTCTGCACGTGCTGCTGTTACCATATTACACCAGAAAGAGATGAAAGGAGGTGTTGTATGGGCCCGACAACTGGGTGGAGAGGGGTCCAAAACTCAGAAATGGAAAGTTATTGTTAGAAATCTTCCATTTAAGGCCAAGGAGAAAGAAATAAAGGATACCTTTTCATCTGCAGGATTTGTGTGGGATGTGATGATGCCACATAGTTCAGACACAGGATTATCAAAGGGGTTTGCGTTTGTCAAATTTACATGCAAACAGGATGCTGAGAGTGCTATTAAAAAGTTCAATGGTCAAAAATTTGGTCAAAGGACGATAGCTGTGGACTGGGCTGTTCCAAAGAAGATATATAGCTCGGGTGCTAGTGCTCCAGTTGATTCAGATGACGGGGAACAGACTGAAAGAGACAGAGAAGGTAGCATTAGTAGTGATGATTTTGAAGCTGAAAATACTGCTGTTCATGAGAAATCTCAGTGCTCCAACAAAGATGAAAGTTCTTCAGAGGATTCAGTGAAAGAAGATATTTCCTCGGAGGTTAATTTTGAAGCAGAAGCAGAAATGGCAAGAAAAGTTCTTGAAAATCTAATTTCATCTTCGGCTAAAGAGGCTCTTCCTTCTTCCATTGATGGTAACCCACCATCTAAAGTGAACAAGGAGCCAGATTTTGATTCGTCCAAGAAGTCATCTGATGTGTCTGATAAAGTATCAAATGAACCTGGAAAGTTAAATGAAAGCAAAACATCTATTCTTAAGCAATCAGATGAAGATGATTTGAAGAGAACTGTTTATATAGGCAATCTTCCTTTTGATATTGATAATGAAGAAGTGAAACAGCGGTTTTCTGGATTTGGTGAAGTGCTATCCTTTGTGCCAGTCCTTCATCAGGTTACAAAGCGACCTAAAGGCACTGGTTTTCTCAAGTTTAAAACGGTCAATGCTGCTACTGCTGCTGTTTCTTCTGCAAATGTTGCATCTGGTGTGGGAATATTTCTGAAAGGCAGGCAACTGAAAGTATTGAATGCCCTGGATAGAAAATCAGCTCATGACAAGGAATTGGAAAAGTCCAAAAATGACAATCATGACCACCGGAATCTTTATCTTGCACAGGAAGGTATTATTCTCGAGGGAACTCCAGCTGCAGAGGGAGTTTCTGCTAGTGATATGGAGAAACGTCAAAGGCTGGAAAAGAAAAGAACGACCAAGCTTCAATCTCCAAATTTTCATGTTTCAAGGACTAGGCTCGTTATACACAATTTACCAAAATCAATGAAAGAAAAAGAACTTCAAAAACTTTGCATTGAAGCGGTTACCTCACGAGCTACAAAACAAAAACCCGTGATTCGACAGATTAAGTTCTTAAAGGATGTGAAGAAGGGAAAGCTACTGACAAAAAATCACTCCTGTGGAGTCGCTTTCGTTGAGTTTTCTGAGCATGAGCACGCCCTTGTAGCCCTGCGAGTTCTCAACAACAATCCAGAAACTTTTGGCCCTATAAATCGCCCGATCGTAGAGTTTGCTATTGACAATGTTCAAACGTTGAAGTTGCGTAAAGCAAAGTTACAAGCTTGGTCACAGGACAATACAGCCAATGTTCCCAAAGCCTGGCAAGGGAATGCGAATACTGATACAATTGCTGGGGATGTCCATTCAAACAAGAACAATTCCAGAAAAAGGAAAGCAATGGGTGATAATCGTCCGGTGCGCAACAAAGATGAAAATGACAATCATGTGTCCAATGATGTGGCGATGGAAGAAAATAGAGCTATAAAAAAGAGGAAAACACGTCCAGAAATCGGTAATACAAACAAGTCGCTGAGACAAAAACCAGAAGGACAAAGATCAATGCCTGAAAAATCGAGCAACAGATCGGTATCCATGGATTCTGGAAAAATAAAAGCTTCTCAGGAAGCTGATGTACAACACAAAAAGAAGGTAAAACATCAAGTAGAGCAGCAGAGGAAGAGGCCAAAGAAAAACAAGGAACCAATAGGGCGGGATGTTGTCGATAAACTCGATGTGCTTATTGAACAATATCGATCCAAGTTCTTGCAGCAGAGGTCAGACCGAACAGATGGTGAAAAGAAAGGCTCTAAACAGGGCTCCCTTTTGATGGCCAAACCCAAGGCTCCGAGGCAAACCCTAGATTCTTACACTGTCAAACGCATCAACAAAACCATTAAAGCCGGCGATTGCGTGCTTATGAGGCCCTCCGAACCCTCGAAACCTTCGTATGTTGCTAAGATTGAGAAGATTGAGGCTGATTCTCGTGGGGCCAATGTGAAGGTCCATGTTCGCTGGTATTACCGGCCGGAGGAATCAATTGGCGGTCGGAGACAGTTTCATGGCTCGAAGGAGCTGTTTCTCTCCGACCATTATGACGTTCAAAGCGCCGACACCATCGAGGGAAAGTGTACGGTGCATACGTTTAAGAATTATACCAAGCTTGATGCCGTTGGAAATGATGATTATTTTTGCCGTTTCGACTATAATTCCATTACTGGAGCTTTCAATCCCGATCGAGTGGCTGTGTATTGCAAGTGTGAGATGCCTTATAATCCCGATGACCTAATGGTTCAGTGCGAGAGCTGCAGTGACTG 3551 43.34 MFRSCGSPLFAYRPMFAAPPPLSRWSLIVGRTFNIAFGLMCLPEPGVFEPAAKLSSSHMGKNKKRKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMITQKGSTEHRGFGFVQFAVAEDANRAIELKNGMSVEGRKITVKHAMHRAPLEQRRSKENQATASKSTINEEGDTSKREEQTINEDRDTSKSEEQTTNEDRDTSEKAEQTTSNSEGKERHLNARKLGSLSSYLEDKEGHSGKQRIARTVVFGGLLNADMAEDVHRQARDVGDICSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMKGGVVWARQLGGEGSKTQKWKVIVRNLPFKAKEKEIKDTFSSAGFVWDVMMPHSSDTGLSKGFAFVKFTCKQDAESAIKKFNGQKFGQRTIAVDWAVPKKIYSSGASAPVDSDDGEQTERDREGSISSDDFEAENTAVHEKSQCSNKDESSSEDSVKEDISSEVNFEAEAEMARKVLENLISSSAKEALPSSIDGNPPSKVNKEPDFDSSKKSSDVSDKVSNEPGKLNESKTSILKQSDEDDLKRTVYIGNLPFDIDNEEVKQRFSGFGEVLSFVPVLHQVTKRPKGTGFLKFKTVNAATAAVSSANVASGVGIFLKGRQLKVLNALDRKSAHDKELEKSKNDNHDHRNLYLAQEGIILEGTPAAEGVSASDMEKRQRLEKKRTTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKLLTKNHSCGVAFVEFSEHEHALVALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSQDNTANVPKAWQGNANTDTIAGDVHSNKNNSRKRKAMGDNRPVRNKDENDNHVSNDVAMEENRAIKKRKTRPEIGNTNKSLRQKPEGQRSMPEKSSNRSVSMDSGKIKASQEADVQHKKKVKHQVEQQRKRPKKNKEPIGRDVVDKLDVLIEQYRSKFLQQRSDRTDGEKKGSKQGSLLMAKPKAPRQTLDSYTVKRINKTIKAGDCVLMRPSEPSKPSYVAKIEKIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKELFLSDHYDVQSADTIEGKCTVHTFKNYTKLDAVGNDDYFCRFDYNSITGAFNPDRVAVYCKCEMPYNPDDLMVQCESCSD 1183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4770953 4790954 - CePI673135_02g005100.1 Cec02g0510 195563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0510 1183 CDD RRM4_RBM28_like 730 827 - -
Cec02g0510 1183 Gene3D - 49 173 IPR012677 -
Cec02g0510 1183 SUPERFAMILY RNA-binding domain, RBD 349 443 IPR035979 GO:0003676(InterPro)
Cec02g0510 1183 Gene3D - 1025 1182 IPR043151 -
Cec02g0510 1183 MobiDBLite consensus disorder prediction 437 495 - -
Cec02g0510 1183 Pfam BAH domain 1043 1156 IPR001025 GO:0003682(InterPro)
Cec02g0510 1183 MobiDBLite consensus disorder prediction 849 868 - -
Cec02g0510 1183 Gene3D - 554 679 IPR012677 -
Cec02g0510 1183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 578 661 IPR000504 GO:0003723(InterPro)
Cec02g0510 1183 SUPERFAMILY FYVE/PHD zinc finger 1151 1182 IPR011011 -
Cec02g0510 1183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 159 IPR000504 GO:0003723(InterPro)
Cec02g0510 1183 Gene3D - 341 468 IPR012677 -
Cec02g0510 1183 SUPERFAMILY RNA-binding domain, RBD 81 339 IPR035979 GO:0003676(InterPro)
Cec02g0510 1183 CDD BAH_BAHCC1 1043 1178 - -
Cec02g0510 1183 Gene3D - 729 824 IPR012677 -
Cec02g0510 1183 MobiDBLite consensus disorder prediction 934 948 - -
Cec02g0510 1183 MobiDBLite consensus disorder prediction 519 569 - -
Cec02g0510 1183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 353 431 IPR000504 GO:0003723(InterPro)
Cec02g0510 1183 MobiDBLite consensus disorder prediction 537 558 - -
Cec02g0510 1183 MobiDBLite consensus disorder prediction 53 75 - -
Cec02g0510 1183 SUPERFAMILY RNA-binding domain, RBD 721 809 IPR035979 GO:0003676(InterPro)
Cec02g0510 1183 FunFam RNA-binding motif protein 28 729 824 - -
Cec02g0510 1183 ProSiteProfiles BAH domain profile. 1042 1158 IPR001025 GO:0003682(InterPro)
Cec02g0510 1183 PANTHER RNA-BINDING MOTIF PROTEIN 14B 78 1017 IPR051945 GO:0003729(PANTHER)
Cec02g0510 1183 SMART BAH_4 1042 1158 IPR001025 GO:0003682(InterPro)
Cec02g0510 1183 Pfam RNA recognition motif 355 424 IPR000504 GO:0003723(InterPro)
Cec02g0510 1183 Pfam RNA recognition motif 83 153 IPR000504 GO:0003723(InterPro)
Cec02g0510 1183 Pfam RNA recognition motif 580 640 IPR000504 GO:0003723(InterPro)
Cec02g0510 1183 SMART rrm1_1 731 822 IPR000504 GO:0003723(InterPro)
Cec02g0510 1183 SMART rrm1_1 354 427 IPR000504 GO:0003723(InterPro)
Cec02g0510 1183 SMART rrm1_1 82 155 IPR000504 GO:0003723(InterPro)
Cec02g0510 1183 SMART rrm1_1 579 657 IPR000504 GO:0003723(InterPro)
Cec02g0510 1183 MobiDBLite consensus disorder prediction 446 495 - -
Cec02g0510 1183 CDD RRM2_RBM28_like 354 430 - -
Cec02g0510 1183 SUPERFAMILY RNA-binding domain, RBD 578 749 IPR035979 GO:0003676(InterPro)
Cec02g0510 1183 MobiDBLite consensus disorder prediction 1002 1031 - -
Cec02g0510 1183 MobiDBLite consensus disorder prediction 182 236 - -
Cec02g0510 1183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 730 838 IPR000504 GO:0003723(InterPro)
Cec02g0510 1183 MobiDBLite consensus disorder prediction 869 917 - -
Cec02g0510 1183 MobiDBLite consensus disorder prediction 849 983 - -
Cec02g0510 1183 CDD RRM1_RBM28_like 82 160 - -
Cec02g0510 1183 MobiDBLite consensus disorder prediction 158 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0510 K14573 - - csv:101217384 1566.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0228 Cec-Chr2:2171485 Cec02g0510 Cec-Chr2:4770953 8.40E-72 dispersed
Cec02g0510 Cec-Chr2:4770953 Cec10g1836 Cec-Chr10:33173085 5.40E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g8 . . . . . Bpe12g00087 . . Cmo19g00694 . . . . . Sed05g2305 Cpe04g00115 Cpe15g00553 Bhi05g01787 Tan02g0774 Cmetu01g1478 . Hepe02g0245 . . Cla02g00500 Cam02g0510 Cec02g0510 Cco02g0517 Clacu02g0512 Cmu02g0508 Cre02g0841 Cone12ag1172 Cone8ag1219 . . . Csa07g00017 . Cme01g01365 Blo04g00526 Blo13g00542 Bda15g01076 Bda14g00569 Bpe15g00854 . Bma03g00563 Bma08g00787 . . . . . . Car19g00525 . . . . . . . . . . . . . . . . Lsi11g01125 . Chy01g00760 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009278 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34