Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0524 ATGAACAGAACATTACCGGAGATGTTGCATTGTTTGAACACTACTGGGAACTGTCCTGATACTCTCAGTGTTCTTGAGAGGCAGAGAGCTCGTTTGAAATGGCAGCAAGATCAGCTTTTGCAGCAGCAACAGCAGCCATTGAATCAGAGCTGTTTCAATAAGGTTGACTACGGCGGTGGATTTCCGCCGCCGGTGGCTGTTCCAGCGGATCACTTCAAGGGGTTTCCTGGGTACATGAGTGGCGGCAGCGGTGGTGGAGGTGGTGGGTTGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTGAATGATGGGTGGTCTGAAATGGGAAAGTTTGATCCTTCTTTGTTGTTGAATGCCACTGCTTATGAGCTCAATTCTTCTCTCTCTAGAACCTCCAGCTGCCCGCCGGCGGTGGCTCCGACGGTGGCGGAGAAGATGGGGTCGGCGGCTGGAAGTGATAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCACAACACTACTACTACCACCACCACCACCACCACCAACAACAACAACAACAACAACAACAACAATAACAAGGTGACTGTGGAAGAAGATAACAACAGCAGCAGCAAGGAGAAGAGGATCAAAGCAAGTTCAGAAGAAGGAGAATTATCCAAAACCACAGATCAAAACAGTACCAAAAACAACTCAACCACCACAACCACAACAAACAATAACAGAGAAACTTCAGCTGATACCTCAAAAGAAAACTCCAAAGCTTCAGAGGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCTACTGATAGCCATAGCTTAGCTGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATCATAAACTATGTCCAATCTCTTCAGAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCTGTTAATCCAAGGTTGGACTTCAATGTCGATGATCTCTTCAACAAAGAGGTTTTCCCCCAATCTTGCACCACCGCGAACTTCCCGACGATCGGCGGAATGTCATCGGAGATGACAAATCCTTCTTCCTACTTACAATTCAATCCAAATAATCAACAAATGGTCTCGTGTTGTGGATTAGAAATGGGAATCAATACCTCCGATGCCGCGGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAACTTTCCTCGATTCATCTTGCCTCACCCAATTTCAACCCTCTTCAGGGTGGGATGTGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCAACCATATACAGGTTCAATTGAAGGAGGCATTATAAAGATGGAAATGTGA 1419 46.02 MNRTLPEMLHCLNTTGNCPDTLSVLERQRARLKWQQDQLLQQQQQPLNQSCFNKVDYGGGFPPPVAVPADHFKGFPGYMSGGSGGGGGGLSLVEMVMGAVKPDPGLNDGWSEMGKFDPSLLLNATAYELNSSLSRTSSCPPAVAPTVAEKMGSAAGSDSFKKRKAEKVHNTTTTTTTTTTNNNNNNNNNNNKVTVEEDNNSSSKEKRIKASSEEGELSKTTDQNSTKNNSTTTTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDDLFNKEVFPQSCTTANFPTIGGMSSEMTNPSSYLQFNPNNQQMVSCCGLEMGINTSDAAALRRTISAPVSFPETFLDSSCLTQFQPSSGWDVDLQNLYNVGFDQGRSSNAFSSQPYTGSIEGGIIKMEM 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4933702 4936534 - CePI673135_02g005240.1 Cec02g0524 195577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0524 472 SMART finulus 276 326 IPR011598 GO:0046983(InterPro)
Cec02g0524 472 MobiDBLite consensus disorder prediction 217 244 - -
Cec02g0524 472 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 320 IPR011598 GO:0046983(InterPro)
Cec02g0524 472 Gene3D - 267 341 IPR036638 GO:0046983(InterPro)
Cec02g0524 472 MobiDBLite consensus disorder prediction 170 197 - -
Cec02g0524 472 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 153 387 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cec02g0524 472 MobiDBLite consensus disorder prediction 245 259 - -
Cec02g0524 472 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 339 IPR036638 GO:0046983(InterPro)
Cec02g0524 472 FunFam Basic helix-loop-helix transcription factor 267 339 - -
Cec02g0524 472 MobiDBLite consensus disorder prediction 198 216 - -
Cec02g0524 472 Coils Coil 22 45 - -
Cec02g0524 472 MobiDBLite consensus disorder prediction 150 259 - -
Cec02g0524 472 CDD bHLH_AtBPE_like 260 345 - -
Cec02g0524 472 Pfam Helix-loop-helix DNA-binding domain 274 321 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0524 Cec-Chr2:4933702 Cec06g2019 Cec-Chr6:33329021 9.00E-32 dispersed
Cec01g0741 Cec-Chr1:8134303 Cec02g0524 Cec-Chr2:4933702 7.50E-43 transposed
Cec05g0849 Cec-Chr5:7179996 Cec02g0524 Cec-Chr2:4933702 3.90E-39 transposed
Cec05g2567 Cec-Chr5:36652382 Cec02g0524 Cec-Chr2:4933702 1.30E-37 transposed
Cec05g2888 Cec-Chr5:39026225 Cec02g0524 Cec-Chr2:4933702 8.50E-36 transposed
Cec06g1853 Cec-Chr6:31891516 Cec02g0524 Cec-Chr2:4933702 9.50E-34 transposed
Cec08g0939 Cec-Chr8:21204990 Cec02g0524 Cec-Chr2:4933702 8.00E-34 transposed
Cec08g1734 Cec-Chr8:28459138 Cec02g0524 Cec-Chr2:4933702 3.10E-29 transposed
Cec09g0837 Cec-Chr9:7777346 Cec02g0524 Cec-Chr2:4933702 3.00E-38 transposed
Cec10g1745 Cec-Chr10:32130978 Cec02g0524 Cec-Chr2:4933702 3.90E-35 transposed
Cec11g0454 Cec-Chr11:4814712 Cec02g0524 Cec-Chr2:4933702 2.30E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29004 PF00010 HLH 1.30E-06 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0524 - - - 0.0