Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0589 ATGGTGATGGAGCGTCGAAATGGATTGAATCGGAAGCGATTTGGAGCTTATTTGCAGTCCGATCCGGCGATTTATACCGGTGATGATAATGATTTCTCTCCCCGGCATAGCAATGCCTCTGCTGCGACTAGTCCGGTGAATCACTACGACAAATCGCCGGCGAGTGGTGACGCTTCGCCTTATTTGATGTCGCCGTGGAATCAGTCCGCTTCGCCGTATTCGAAATCTCCGTGGATCGTTCGATCGGGTATGAATTTGTACGACGATGAATTTTATGCTCAGAATGGACTCATCGGCTCTCTGGTGCGAGAGGAAGGTCATGTGTATTCGTTGGCGGTGGCAGGGGATTTGTTGTACACTGGATCGGATAGCAAGAACATTCGTGTGTGGAAGAATTTAAAGGAGTTCACTGGATTTAAATCGAACAGTGGATTAGTGAAGTCGATTATCTTGTGTGGAGATAAGATTTTCACAGGACATCAAGACGGCAAGATTCGTATCTGGAAAGTTTCGTCCAAGAATCCGAAATCTCATAGCCGAATCGGAAGCTTACCGACGTTGAAGGAATTCGTCAAAAGCTCAATGAATCCAAGAAATTACGTGAAAGTCCGGCGCAATCGCAACGTCCTCCGTATAAAGCATTTCGACGCCATTTCCTCGATGAGCCTGAACGAGGAGTTAGGACTTTTATACTCCGGATCTTGGGACAAAACGATGAAGGTCTGGCGAATCGCAGATTCGAAATGCCTTGAATCAATCACCGCTCACGACGATGCCGTGAACGCCGTCGCATCAGGATTGGAAAGCCTCGTGTTCACCGGATCCGCGGACGGAACAGTGAAGGTCTGGCGGAGAGAGTTGCAGGGGAAAGGAACGAAGCATTTTCTGGTTCAGGTGTTGCTGAAGCAAGAAAATGCCATAACGGCGTTGGCTGTGAACCGGTCATCGGCGATTTTGTACTGCGGTTCATCAGACGGGGTGGTGAATTATTGGGAGAGCGAGAAGCATTTATCGCACGGCGGCATCCTCCGCGGCCATAAACTGGCTGTGCTGTGCTTAGCGACGGCCGGAAACTTGGTGTTCAGTGGATCGGCGGACAAAAACATCTGCGTGTGGCGGAGGGAAGAGAACAGCGGATTTCACACGTGTCTCTCTGTTCTGACCGGCCATTCAGGACCGGTCAAATGCTTAGCCGTTAAGGAAGATGAAGAAGAATCGCCATCGCCACCGGTAGAGGAAAGCAATGTCAAAAAGCTGTACGGCAGCTATAGCAACCGGCGGTGGATTGTTTACAGTGGTAGCCTGGACCGATCAGTGAAAGTGTGGCGCGTGTCGGAGAACGCGCCGGAGCTGTTGAAACTCCGGGACGCGGATAGGCCGTACTTAAGCAAGAAGTAG 1398 50.5 MVMERRNGLNRKRFGAYLQSDPAIYTGDDNDFSPRHSNASAATSPVNHYDKSPASGDASPYLMSPWNQSASPYSKSPWIVRSGMNLYDDEFYAQNGLIGSLVREEGHVYSLAVAGDLLYTGSDSKNIRVWKNLKEFTGFKSNSGLVKSIILCGDKIFTGHQDGKIRIWKVSSKNPKSHSRIGSLPTLKEFVKSSMNPRNYVKVRRNRNVLRIKHFDAISSMSLNEELGLLYSGSWDKTMKVWRIADSKCLESITAHDDAVNAVASGLESLVFTGSADGTVKVWRRELQGKGTKHFLVQVLLKQENAITALAVNRSSAILYCGSSDGVVNYWESEKHLSHGGILRGHKLAVLCLATAGNLVFSGSADKNICVWRREENSGFHTCLSVLTGHSGPVKCLAVKEDEEESPSPPVEESNVKKLYGSYSNRRWIVYSGSLDRSVKVWRVSENAPELLKLRDADRPYLSKK 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5780978 5782375 + CePI673135_02g005890.1 Cec02g0589 195642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0589 465 Gene3D - 84 205 IPR015943 GO:0005515(InterPro)
Cec02g0589 465 CDD WD40 105 443 - -
Cec02g0589 465 MobiDBLite consensus disorder prediction 31 50 - -
Cec02g0589 465 SUPERFAMILY WD40 repeat-like 100 448 IPR036322 GO:0005515(InterPro)
Cec02g0589 465 PRINTS G protein beta WD-40 repeat signature 430 444 IPR020472 -
Cec02g0589 465 PRINTS G protein beta WD-40 repeat signature 230 244 IPR020472 -
Cec02g0589 465 PRINTS G protein beta WD-40 repeat signature 271 285 IPR020472 -
Cec02g0589 465 Gene3D - 292 460 IPR015943 GO:0005515(InterPro)
Cec02g0589 465 Pfam WD domain, G-beta repeat 214 242 IPR001680 GO:0005515(InterPro)
Cec02g0589 465 Pfam WD domain, G-beta repeat 424 442 IPR001680 GO:0005515(InterPro)
Cec02g0589 465 Pfam WD domain, G-beta repeat 248 283 IPR001680 GO:0005515(InterPro)
Cec02g0589 465 Pfam WD domain, G-beta repeat 105 130 IPR001680 GO:0005515(InterPro)
Cec02g0589 465 Pfam WD domain, G-beta repeat 303 331 IPR001680 GO:0005515(InterPro)
Cec02g0589 465 Pfam WD domain, G-beta repeat 342 372 IPR001680 GO:0005515(InterPro)
Cec02g0589 465 SMART WD40_4 94 131 IPR001680 GO:0005515(InterPro)
Cec02g0589 465 SMART WD40_4 380 443 IPR001680 GO:0005515(InterPro)
Cec02g0589 465 SMART WD40_4 293 332 IPR001680 GO:0005515(InterPro)
Cec02g0589 465 SMART WD40_4 246 284 IPR001680 GO:0005515(InterPro)
Cec02g0589 465 SMART WD40_4 205 243 IPR001680 GO:0005515(InterPro)
Cec02g0589 465 SMART WD40_4 336 373 IPR001680 GO:0005515(InterPro)
Cec02g0589 465 SMART WD40_4 132 169 IPR001680 GO:0005515(InterPro)
Cec02g0589 465 Gene3D - 206 291 IPR015943 GO:0005515(InterPro)
Cec02g0589 465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 283 - -
Cec02g0589 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 283 IPR001680 GO:0005515(InterPro)
Cec02g0589 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 343 382 IPR001680 GO:0005515(InterPro)
Cec02g0589 465 FunFam BnaA09g28200D protein 201 288 - -
Cec02g0589 465 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 49 446 IPR045182 -
Cec02g0589 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 332 IPR001680 GO:0005515(InterPro)
Cec02g0589 465 MobiDBLite consensus disorder prediction 28 54 - -
Cec02g0589 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 252 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0589 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0589 Cec-Chr2:5780978 Cec05g2132 Cec-Chr5:33020022 1.90E-90 dispersed
Cec02g1376 Cec-Chr2:30823677 Cec02g0589 Cec-Chr2:5780978 2.80E-110 transposed
Cec07g1435 Cec-Chr7:29931993 Cec02g0589 Cec-Chr2:5780978 2.90E-45 transposed
Cec02g0589 Cec-Chr2:5780978 Cec08g1593 Cec-Chr8:27451714 1.70E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g527 . Blo15g00718 Bda06g01024 Bda08g01318 Bpe07g00404 Bpe12g00071 . Bma12g00483 Cmo19g00652 Cmo11g01329 . . . . Sed11g0992 . . Bhi05g01171 Tan02g1913 Cmetu03g1602 . Hepe02g0551 . . Cla02g00560 Cam02g0588 Cec02g0589 Cco02g0600 Clacu02g0586 Cmu02g0584 Cre02g0914 . . . . . Csa07g00816 . . . Blo13g00559 Bda15g00021 Bda14g00532 . . . . . . . Cma11g01780 Cma19g00639 . . . . . . . . . . . . . . . . . . . . Chy01g00013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009507 6 1 2 1 2 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 1 1 1 33