Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0641 ATGGCTCAGGTTCCACCTCAACCGCAAGTTCCCAACTCCGGTGCCGATCCGGCCGCCAATGGAGCGGCAAATCAGCATGTCACGACCTCCTTGTATGTGGGAGATCTTGACGTCAACGTCACCGATTCTCAGCTCTATGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACCACCCGTCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTTGATGCGTCAAGGGCATTAGATATGCTAAACTTCACCCCTTTGAATGGGACTCCCATTAGAGTCATGTATTCACATCGTGACCCTAGCGTGCGGAAAAGTGGGTCTGGAAATATTTTTATCAAGAACTTGGACAAGGCAATTGATCACAAAGCTCTGCACGATACCTTTTCTGCATTTGGAAGCATTCTATCTTGCAAGGTTGCTACAGATTCATCTGGCCAGTCCAAAGGCTTTGGTTTTGTGCAATTTGACACTGAGGAAGCTGCCTTAAAAGCTATAGAAAAGTTGAATGGTATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACGAAATTTAATAATGTTTTTGTTAAGAATCTAGCAGAAACTACATCTGAAGAAGATTTGAAGAATATGTTTGGGGAGTTTGGACCAATCACCAGTGTTGTGGTGATGAGGGATGGGGAAGGAAAATCAAAATGCTTTGGCTTTGTTAACTTTGAGAATGCGGATGATGCTGCTAGATCTGTTGAAGCCCTCAATGGAAAGAAGGTTGATGGGAAAGAGTGGTACGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAACTGAAAAATCGATTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTGCAAACTTGTATGTTAAGAATTTAGATGATAGCATTGATGATGAAAAACTGAAGGAGTTATTCACTTTGTTTGGAACCATTACCTCATGCAAGGTTATGCTTGACCCCAATGGAATCAGTAGAGGATCTGGCTTTGTTGCATTCTCAACTCCGGAAGAGGCTGGCAGAGCTCTTGCAGAGATGAATGGAAGAATGATTGTGAGCAAGCCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCACAATTTTCCCAAATGCAGCCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCAATGTATCCTCCAGGTGGTCCAGGTATTGGACAACAGATATTCTATGGCCAAGCTCCACCTACTATTATTTCCTCCCAGCCCGGCTTTGGTTATCAACAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTACCAATGGTTCAGCAGGGCCAGCAAGGGCAAAGATCCGGTGGCAGGCGTGCTGGTGCCATTCAGCAAACCCAGCAGCCTGTTCCTTTGATGCAGCAGCAGATGCTACCAAGAGGACGTGTCTACCGTTATCCTCCTGGACGTGGACTGCCTGATCTTCCCATGCCTGGTGTTGCTGGAGGCATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCACCGCGGGATGCAGTCCACCCTCAACCAGTTCCTGTGGGTGCTTTGGCTTCTGCTCTTGCAAATGCAACTCCAGACCAGCAGAGAACGATGCTGGGTGAAAATCTTTATCCACTCGTGGAACAGCTAGAGCCTGATAATGCGGCCAAGGTAACAGGAATGCTATTGGAAATGGACCAAACTGAGGTTCTTCACTTGCTGGAGTCACCTGAAGCTCTGAAAGCCAAGGTGGCGGAGGCGATGGAGGTTTTAAGAAGTGTCGCTCAGCAGACTGGCAATGCAGCTGATCAATTGGCTTCACTATCTCTGACTGACAACCTTGATTCCTAA 1950 46.77 MAQVPPQPQVPNSGADPAANGAANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDMLNFTPLNGTPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGANLYVKNLDDSIDDEKLKELFTLFGTITSCKVMLDPNGISRGSGFVAFSTPEEAGRALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAADQLASLSLTDNLDS 649
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 6498534 6501937 - CePI673135_02g006410.1 Cec02g0641 195694
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0641 649 FunFam Polyadenylate-binding protein 294 399 - -
Cec02g0641 649 FunFam Polyadenylate-binding protein 16 114 - -
Cec02g0641 649 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676(InterPro)
Cec02g0641 649 Gene3D - 117 205 IPR012677 -
Cec02g0641 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723(InterPro)
Cec02g0641 649 PANTHER RNA BINDING PROTEIN 23 209 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Cec02g0641 649 CDD RRM3_I_PABPs 207 286 - -
Cec02g0641 649 SUPERFAMILY PABC (PABP) domain 493 638 IPR036053 GO:0003723(InterPro)
Cec02g0641 649 FunFam Polyadenylate-binding protein 199 293 - -
Cec02g0641 649 Pfam RNA recognition motif 313 381 IPR000504 GO:0003723(InterPro)
Cec02g0641 649 Pfam RNA recognition motif 210 278 IPR000504 GO:0003723(InterPro)
Cec02g0641 649 Pfam RNA recognition motif 31 101 IPR000504 GO:0003723(InterPro)
Cec02g0641 649 Pfam RNA recognition motif 119 186 IPR000504 GO:0003723(InterPro)
Cec02g0641 649 CDD RRM1_I_PABPs 30 109 IPR034364 -
Cec02g0641 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723(InterPro)
Cec02g0641 649 MobiDBLite consensus disorder prediction 1 21 - -
Cec02g0641 649 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676(InterPro)
Cec02g0641 649 SMART rrm2_1 118 190 IPR003954 GO:0003676(InterPro)
Cec02g0641 649 SMART rrm2_1 209 281 IPR003954 GO:0003676(InterPro)
Cec02g0641 649 SMART rrm2_1 30 103 IPR003954 GO:0003676(InterPro)
Cec02g0641 649 SMART rrm2_1 312 384 IPR003954 GO:0003676(InterPro)
Cec02g0641 649 CDD RRM2_I_PABPs 115 191 IPR045305 -
Cec02g0641 649 SMART rrm1_1 312 384 IPR000504 GO:0003723(InterPro)
Cec02g0641 649 SMART rrm1_1 30 103 IPR000504 GO:0003723(InterPro)
Cec02g0641 649 SMART rrm1_1 209 281 IPR000504 GO:0003723(InterPro)
Cec02g0641 649 SMART rrm1_1 118 190 IPR000504 GO:0003723(InterPro)
Cec02g0641 649 CDD RRM4_I_PABPs 310 388 - -
Cec02g0641 649 Gene3D - 2 116 IPR012677 -
Cec02g0641 649 FunFam Polyadenylate-binding protein 548 630 - -
Cec02g0641 649 Pfam Poly-adenylate binding protein, unique domain 559 624 IPR002004 GO:0003723(InterPro)
Cec02g0641 649 Gene3D - 547 631 - -
Cec02g0641 649 Gene3D - 206 308 IPR012677 -
Cec02g0641 649 FunFam Polyadenylate-binding protein 115 198 - -
Cec02g0641 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723(InterPro)
Cec02g0641 649 SMART poly_2 564 627 IPR002004 GO:0003723(InterPro)
Cec02g0641 649 Gene3D - 309 411 IPR012677 -
Cec02g0641 649 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723(InterPro)
Cec02g0641 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723(InterPro)
Cec02g0641 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0641 Cec-Chr2:6498534 Cec08g0749 Cec-Chr8:19232701 6.70E-187 dispersed
Cec05g0353 Cec-Chr5:2899343 Cec02g0641 Cec-Chr2:6498534 3.00E-16 transposed
Cec10g1796 Cec-Chr10:32726994 Cec02g0641 Cec-Chr2:6498534 1.40E-08 transposed
Cec02g0641 Cec-Chr2:6498534 Cec05g1192 Cec-Chr5:10914748 0.00E+00 wgd
Cec02g0641 Cec-Chr2:6498534 Cec09g1863 Cec-Chr9:35255250 1.30E-20 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0641 K13126 - csv:101223017 1189.87