Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0744 ATGCGAACTATAGGAGCATTTCGACCTCAATTGACGGAGTTATTGAACCGCTCGTGTTTCAGAAGCTTCAGAGTTAGAGCTCTCTCGTCTTCATCTCTTGCCTCCTCGAATCAATCCCGCGGTGGCCTTCCTCGCTTCTTCTCCCAAGTTCTCCCTTCTTATAAGGGTGATCTTATTCATCTAGAAGGCGATGAAGTCTGGCATATGACTAAAGTGTTGAGGTTGAAGACTGATGATAGAGTGGAGCTGTTCAATGGAAATGGAGGTTTAGTAGAAGGAAGCATAAAGAACATTCGTGTCAATGGGCTTGACATTCTGGCTATGGAAGATCCAAAATCTGTTTTACCCCAAAGCACACAATGGCATGTATTTGCAGCCTGCGGTACTCTAAAGGGCGGTCGTGCTGATTGGCTTGTTGAGAAATGTACAGAACTGGGTGCCAGCAGTGTAACTCCTCTGCTAACAGAACGTTGCCCTACCATCTCTGATAACCGGGTACACAGATTTGAACGTATCACATTGGCAGCAACTAAACAATGTCAAAGACTCCACCAAATGAATCTGAATTCTCCATTGAAATTTGATGGTCTTTTGCACCTTATTAATGCAATGAAGCTATCTTTTGTAGCAGTTGCAGAAGCGACACCGCTTGTAAGTACATTAGCTTCAACAGAAATAGAGTCTGGTGGGCTTTTGGTTGTCGGACCTGAAGGAGACTTCACCGAGAAAGAGTTGCAATCTTATCAACCCTCATGTTATGGTCTGACTCAAAAAGTTCTAGCTATTAATCTCTCTTTCAGGGTATCTCCAAAATCAGCACCATTGAAAAGCCTCAAAGTTGGAGCGTTTGTGGTTTGGGGCATGTAA 867 43.83 MRTIGAFRPQLTELLNRSCFRSFRVRALSSSSLASSNQSRGGLPRFFSQVLPSYKGDLIHLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLHQMNLNSPLKFDGLLHLINAMKLSFVAVAEATPLVSTLASTEIESGGLLVVGPEGDFTEKELQSYQPSCYGLTQKVLAINLSFRVSPKSAPLKSLKVGAFVVWGM 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8093862 8098422 - CePI673135_02g007440.1 Cec02g0744 195797

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0744 288 Pfam RNA methyltransferase domain 121 249 IPR046886 -
Cec02g0744 288 NCBIfam RsmE family RNA methyltransferase 57 247 IPR006700 GO:0006364(InterPro)|GO:0008168(InterPro)
Cec02g0744 288 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 35 249 IPR006700 GO:0006364(InterPro)|GO:0008168(InterPro)|GO:0070042(PANTHER)|GO:0070475(PANTHER)
Cec02g0744 288 SUPERFAMILY PUA domain-like 47 99 IPR015947 -
Cec02g0744 288 Gene3D - 42 260 IPR029026 -
Cec02g0744 288 SUPERFAMILY alpha/beta knot 119 249 IPR029028 -
Cec02g0744 288 Pfam RNA methyltransferase PUA domain 61 98 IPR046887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0744 K09761 - - csv:101213733 432.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g763 Blo02g00922 Blo03g00061 . . . . . . Cmo19g00555 . . . . . . . Cpe15g00430 . . . . . . . Cla02g00696 Cam02g0729 Cec02g0744 Cco02g0768 Clacu02g0740 Cmu02g0735 Cre02g1048 . . Cone3ag1042 . Lsi03g00598 Csa07g00671 . Cme01g00133 . . . . . . . . Sed07g1141 Cmo04g00467 . . Cma19g00541 . Car19g00398 . . Bhi11g01118 Tan01g0612 Cmetu07g1601 . . Mch10g0413 . . . . . . . . . . Chy01g00144 Cme07g02206
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011527 0 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 5 1 31