Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0887 ATGCCATTTATAGCTAAGCTAAAGCTCAAGCTAGCATTATTAAGAAAAACGAAGAGAGTTCATCAAATACTCCAAAAGGACTCATTCGTTAGCGATGCCAAAGGTGAGGCTTCTAGAGAAATTGATCTTGAGAAGGGAACTCGAGTTCCGCGAAGCAATTCTGACATGGGAATGGAGGCCTTCAATAAGCAGATACAAGACGTTGAGGTTCAAGTAGAGAAGCTCTCTGGGCTTCTTATTAAACTGAAGGATGCTAATGAGGAATCGAAGGCTGTTACCAAAGCATTAGAGATGAAAGCTATCAAGAAGCGTATGGAAAAGGATATCGATGAAGTAGGGAAAATAGCACGCAATGTCAAGGGGAAGCTGGAGGCTGTAAATAAAGATAACTTGACCAATAGGCAGAAGCCCGGGTGTGAGAAGGGAACGGCTATTGACAGAGCAAGAATGAACGTGACAAATGCCTTAACAAAAAAGTTCAAGGATCTGATGATAGAATTTCAGACCCTTCGGCAAAGAATTCAAGATGAGTACCGTGAAGTTGTGGAAAGACGAGTGATTACAGTTACGGGAAGCAGACCAGATGAGACGACAATTGATCACCTTATAGAAACTGGAAACAGTGAACAAATATTCCAGAATGCATTTGTACAAATGGGACGAGGACAGGTTATCAGTGCGGTGGAGGAAATTCAAGAGCGACACGATGCAGTTAAAGAGATTGAGAAAAGGCTCTCGGAATTGCATCAGATTTACCTTGACATGGCAGTTTTAGTGGAAGCCCAGAGTGAAATTTTGGATAACATAGAAAATCAGTTTGTTTGTGTGATCCAACCATCGAAGAAGGAACAAGAACACCTTCTTCTGATAAGTTCTTGCCATTTTCCTCCATTTGCTCAATATGGTAACGAATGCAGTGGACCACGTTCGAACAGGAACCGATGCACTCCAGACAGCGAAGAGCTTACAGAAGCGATCAAGAAAATGCATGATGATTGGTATCATATTGCTGCTGGTCATAGCAATCATAATCGTCCTTGCAGTGCATCCATGGAAGAAGTAAACTGA 1068 42.04 MPFIAKLKLKLALLRKTKRVHQILQKDSFVSDAKGEASREIDLEKGTRVPRSNSDMGMEAFNKQIQDVEVQVEKLSGLLIKLKDANEESKAVTKALEMKAIKKRMEKDIDEVGKIARNVKGKLEAVNKDNLTNRQKPGCEKGTAIDRARMNVTNALTKKFKDLMIEFQTLRQRIQDEYREVVERRVITVTGSRPDETTIDHLIETGNSEQIFQNAFVQMGRGQVISAVEEIQERHDAVKEIEKRLSELHQIYLDMAVLVEAQSEILDNIENQFVCVIQPSKKEQEHLLLISSCHFPPFAQYGNECSGPRSNRNRCTPDSEELTEAIKKMHDDWYHIAAGHSNHNRPCSASMEEVN 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11139652 11143506 - CePI673135_02g008870.1 Cec02g0887 195940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0887 355 CDD SynN 58 215 IPR006011 GO:0016020(InterPro)
Cec02g0887 355 SMART tSNARE_6 223 290 IPR000727 -
Cec02g0887 355 SUPERFAMILY t-snare proteins 55 272 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cec02g0887 355 PANTHER SYNTAXIN 60 272 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cec02g0887 355 Gene3D - 54 259 - -
Cec02g0887 355 Pfam Syntaxin 61 262 IPR006011 GO:0016020(InterPro)
Cec02g0887 355 CDD SNARE_syntaxin1-like 227 272 - -
Cec02g0887 355 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 228 273 IPR000727 -
Cec02g0887 355 Coils Coil 58 85 - -
Cec02g0887 355 SMART SynN_4 53 179 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0887 Cec-Chr2:11139652 Cec10g1365 Cec-Chr10:27908105 9.30E-74 dispersed
Cec02g0885 Cec-Chr2:11094018 Cec02g0887 Cec-Chr2:11139652 3.30E-78 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0887 K08486 - csv:101214355 429.483