Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g0894 ATGAAGGTGTTTTGGATTAGGAGGAATGGGCATTGGGTCAAAAGCAGAGTGATGTTATTTGCATTATTATTGTTGTTTGGGATGTGGATGCCTTTGGGAGTGATTGGTGTTTCTTCTTCGAATCAAAGGGTGTTGAACGTTGGAGTTTTGTTCACTCTTGATTCGGTTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCTGCCCTGGACGACGTCAATGCCGATAACAACATTCTTCCAGGAACAAAGCTGAATTTGATCCTACATGACACCAACTGCAGCGGATTTCTTGGAACTCTGGAAGCCTTGCAGTTGATGGAAGATGAAGTGGTTGCTGTTATTGGGCCGCAATCTTCGGGCATCGTTCACGTCATTTCTCATGTTGTTAATGAACTTCATATACCGCTTCTATCATTTGGAGCTACAGATCCTGCTTTGTCTGCACAACAATACCAGTATTTCGTTCGGACCACACAAAGTGATTACTTCCAAATGAATGCAATTGCTGATATGGTAGATTATTTTGGATGGAGAGAGGTCGTTGCCATTTTTGTAGACGATGATAATGGCAGGAATGGGATCTCAGCACTGAACGATGCCTTGGCGAAGAAGCGAGCAAAGATCTCTTATAAGGCTGCCTTCCCTCCTGGATCCTCCAATAGCGCAATAAGTGACTTGTTGGTTTCGATAAACCTAATGGAATCTCGGGTTTACATTGTACACGTCAATCCTGACACAGGTCTTTCAGTATTTTCAATAGCTAAGAAACTTCAAATGATGGGTAGTGGCTATGTCTGGATTGCAACAGATTGGCTTTCTTCTTTTCTTGATTCTTTTGAAACAAATATTCTTGAGGTAATGAATCAATTACAGGGTGTTGTTGCTCTTCGTCACCATACCCCAGATGGTGATTTGAAGAAAAACTTTGTCTCCAAGTGGAGGAATCTAAAATACAAGAAGGGTCGAAACTTCAACTCTTATGCACTTTATGCATACGACTCTGTTTGGTTAGCAGCCCATGCTCTCGACACATTTATTAAAGAAGGTGGAAATATATCCTTTTCCAACGACTCGAAGTTACGTGGAAATGATGAAAGCATGCTACACTTAAAATCTCTTCGAGTGTTTAACGACGGCAAACAACTTCTACAAACAATTAAGAGAACAAACTTCACTGGTGTAAGTGGGAAAATTCAATTTGGGGATGATAGAAATTTGATTCATCCAGCTTATGATATCCTAAACATTGGGGGAACTGGTTCACGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCAACTATTGCACCAGAAAACTTGTATACCAAGACTCTTAATGCTTCCCCTAATAACCATCTCTACAGTGTCATATGGCCGGGTGAAGGAACGGCCATTCCTCGAGGATGGGTGTTTCCACATGATGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCATTTGTTTCTAAAGACAAGAACCCTCCAGGTGTTAAAGGATATTGTATAGATGTGTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACATATATATATTATATGGAGATGGAAAGGACACTCCTGAGTACAACAATCTTGTAGCTGAAGTTTCACAGAATAAATACGATGCAGTTGTTGGAGATATTACAATTGTAACAAATAGAACAAAGATTGTAGACTTCACACAACCATTTATGGAGTCAGGACTTGTTGTAGTTACTGTCCTCAAAGAGGAGAAGTCTAGTCCATGGGCTTTTCTTAGGCCATTTACTATTCAAATGTGGGTTATCACAGCAATATTCTTTATTTTTGTCGGAGCAGTTGTTTGGATTCTCGAGCACCGGACTAATGAAGAGTTTCGTGGTCCGCCGAGGCAGCAATTAATTACAATATTTTGGTTTAGTTTCTCGACGATGTTTTTTTCTCATAAGGAAAACACTGTAAGCACCCTCGGACGGTTGGTGCTGATAATATGGCTCTTTGTTGTGTTAATTATCAACTCAAGCTACACAGCTAGTTTGACGTCGATCTTAACGATACAACAACTAACGTCAAAGATTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCCATTGGAGTTCAAGAAGGGTCATTTGCATTGAATTATCTGATTGATGAATTGAATATAGCAGCATCTAGGATCATTAAACTGAAAAGTCAAGAGGAATATGTCGATGCTCTTAAGCGTGGATCGAGAAATGGTGGGGTTGGTGCCATTGTTGACGAGCTTCCTTATGTTGAGCGTTTTTTGGCTAGTACCAATTGCATATTCAGGACAGTTGGACAAGAGTTCACGAAAAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCAGTTGATTTGTCAACAGCCATTCTTCAACTCTCAGAGAATGGTGATCTTCAAAAGATCCACGAAAAATGGCTATCGCGAACTGAGTGTTCGATGAGCCTAAACCAAGTTGACGTAAACAAGCTATCATTGAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGCATTTCCTGCTTTGTTTCTCTTTCAATATTCTTCTTTCGAGTATTAATCCAATACCGAAGATTTACCCCGGAAATGCAATTTGAAGTCGAGGAAATTGAACCTGTTAGGACGAGACACCTTAGTCGTACAACCAGCTTCATGCACTTTGTAGATAAAAAAGAAGCAGAAGTTAAAGGCCAGCTTAAAAGAAAAGCTAGTGATAACAAACAAGCTAGCCAGAGCTCAGAGGGCCACCCTAATTCATCTCCTTGA 2802 40.44 MKVFWIRRNGHWVKSRVMLFALLLLFGMWMPLGVIGVSSSNQRVLNVGVLFTLDSVIGRSAQPAILAALDDVNADNNILPGTKLNLILHDTNCSGFLGTLEALQLMEDEVVAVIGPQSSGIVHVISHVVNELHIPLLSFGATDPALSAQQYQYFVRTTQSDYFQMNAIADMVDYFGWREVVAIFVDDDNGRNGISALNDALAKKRAKISYKAAFPPGSSNSAISDLLVSINLMESRVYIVHVNPDTGLSVFSIAKKLQMMGSGYVWIATDWLSSFLDSFETNILEVMNQLQGVVALRHHTPDGDLKKNFVSKWRNLKYKKGRNFNSYALYAYDSVWLAAHALDTFIKEGGNISFSNDSKLRGNDESMLHLKSLRVFNDGKQLLQTIKRTNFTGVSGKIQFGDDRNLIHPAYDILNIGGTGSRRIGYWSNYSGLSTIAPENLYTKTLNASPNNHLYSVIWPGEGTAIPRGWVFPHDGKPLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPHIYILYGDGKDTPEYNNLVAEVSQNKYDAVVGDITIVTNRTKIVDFTQPFMESGLVVVTVLKEEKSSPWAFLRPFTIQMWVITAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTIQQLTSKIEGIDSLISSTDAIGVQEGSFALNYLIDELNIAASRIIKLKSQEEYVDALKRGSRNGGVGAIVDELPYVERFLASTNCIFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHEKWLSRTECSMSLNQVDVNKLSLSSFWGLFLICGISCFVSLSIFFFRVLIQYRRFTPEMQFEVEEIEPVRTRHLSRTTSFMHFVDKKEAEVKGQLKRKASDNKQASQSSEGHPNSSP 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11314900 11319564 - CePI673135_02g008940.1 Cec02g0894 195947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g0894 933 Pfam Bacterial extracellular solute-binding proteins, family 3 536 598 IPR001638 -
Cec02g0894 933 PIRSF IGluLR_plant 14 932 IPR017103 -
Cec02g0894 933 Gene3D - 160 433 - -
Cec02g0894 933 SMART GluR_14 480 822 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cec02g0894 933 Gene3D - 589 717 - -
Cec02g0894 933 Gene3D - 718 824 - -
Cec02g0894 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 118 146 - -
Cec02g0894 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 249 272 - -
Cec02g0894 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 58 74 - -
Cec02g0894 933 FunFam Glutamate receptor 716 824 - -
Cec02g0894 933 FunFam Glutamate receptor 590 720 - -
Cec02g0894 933 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 46 910 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cec02g0894 933 SUPERFAMILY Periplasmic binding protein-like II 455 821 - -
Cec02g0894 933 CDD PBP1_GABAb_receptor_plant 46 434 IPR044440 -
Cec02g0894 933 CDD GluR_Plant 477 820 - -
Cec02g0894 933 Gene3D - 64 408 - -
Cec02g0894 933 Pfam Receptor family ligand binding region 61 418 IPR001828 -
Cec02g0894 933 SUPERFAMILY Periplasmic binding protein-like I 40 471 IPR028082 -
Cec02g0894 933 Gene3D - 474 588 - -
Cec02g0894 933 MobiDBLite consensus disorder prediction 916 933 - -
Cec02g0894 933 FunFam Glutamate receptor 474 590 - -
Cec02g0894 933 Pfam Ligand-gated ion channel 822 853 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cec02g0894 933 FunFam Glutamate receptor 160 322 - -
Cec02g0894 933 MobiDBLite consensus disorder prediction 907 933 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0894 Cec-Chr2:11314900 Cec11g1930 Cec-Chr11:33463121 4.80E-287 dispersed
Cec02g0894 Cec-Chr2:11314900 Cec02g0898 Cec-Chr2:11363148 0.00E+00 proximal
Cec02g0195 Cec-Chr2:1838873 Cec02g0894 Cec-Chr2:11314900 1.20E-245 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g0894 K05387 - csv:101215485 1646.33