Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1072 ATGATTGAGAAAATGGCGGACGACGAATTCTCAGACTGTTTTCTCCAAATCCCGCTCACCGGATCCAACCCTTCTCTTCTCAAGAAGAAAAGAAACCTCCCCGGAACTCCAGATCCGGAAGCAGAAGTGATAGCGTTGTCACCAAAGACGTTGATGGCGACGAACCGATTCGTGTGTGAAATATGCGGAAAAGGGTTTCAGAGAGACCAAAATTTGCAACTACACAGACGAGGACATAACCTTCCATGGAAGCTAAAGCAAAGAAGTAGTAAAGAACCAAAGAAGAGAGTGTATGTGTGTCCTGAGAAAAGCTGTGTTCATCACCATCCATCAAGAGCTTTGGGAGATCTTACAGGGATAAAAAAGCACTTTTGTAGAAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAATGCTCAAAGAGATACGCAGTGCAATCTGATTGGAAAGCACACTCCAAAACTTGTGGTACTAGAGAATACAAATGTGATTGTGGAACTCTATTTTCAAGGAGAGATAGCTTCATAACTCACAGAGCATTCTGCGATGCATTAGCAGAAGAAACAGCAAGAGTAAAAGCAGGAACAACAATAAGCAATAATTTCAACTATAATTTAATGGGAGCGGGAAGCTGCAGAGATGATGAAACAGGGTTATTCATGGCTCAACAGTTGGGTTCAATTTTCAAGCCAATTTCAGTGAAGGAAGCAACAATGGCAATAAGCAGCAGTGGGGTTTCCTTAAGAAGCAATAATAATTACAACAATCTTCAAATGATTGGAGGGATGATGATGAATAATAATTCAGGAGTAATGTACTGCGAAGATCCACTTTGGGGAAGCTCAGTACAAATGGGTGATTATAATCAAAATCAGGGGTTATTGATGAATAATGGGGGAGGAGTTTCTTCATTATACAGCCATCAATTACAACAACTGAATCAAAACCAGATGGGAAATATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGCCAACTTCTTCTACTACATCTGCCCCATCACTACTACTACTACAACAACAACAGGGGTTTTTGTTCAATAATAATGGGACTCAGTATTGTAATTCTTCTAGTACTACAAATCCAATTGTTGTTGTTGAGAATGTGAATAAGGAGATGTACACTGCAAAACGGCGTCGTACTGAGAGTGAAATTGAGTGTGGAAGTGGAAGTGGAAGTGGAAGTGGAACAATGGGACCAGGAACAGGAGCAGGGGAGACAAGGGATTTTCTCGGAGTTGGTGCCAAAACTATATGTCACGCTTCAGCATCAATCAACGGATGGATTTAG 1317 41.23 MIEKMADDEFSDCFLQIPLTGSNPSLLKKKRNLPGTPDPEAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPKKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVKAGTTISNNFNYNLMGAGSCRDDETGLFMAQQLGSIFKPISVKEATMAISSSGVSLRSNNNYNNLQMIGGMMMNNNSGVMYCEDPLWGSSVQMGDYNQNQGLLMNNGGGVSSLYSHQLQQLNQNQMGNMSATALLQKAAEIGPTSSTTSAPSLLLLQQQQGFLFNNNGTQYCNSSSTTNPIVVVENVNKEMYTAKRRRTESEIECGSGSGSGSGTMGPGTGAGETRDFLGVGAKTICHASASINGWI 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20380393 20381881 + CePI673135_02g010720.1 Cec02g1072 196125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1072 438 SMART c2h2final6 133 153 IPR013087 -
Cec02g1072 438 SMART c2h2final6 57 79 IPR013087 -
Cec02g1072 438 FunFam protein indeterminate-domain 12-like 36 104 - -
Cec02g1072 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cec02g1072 438 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Cec02g1072 438 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 132 156 - -
Cec02g1072 438 Gene3D Classic Zinc Finger 91 181 - -
Cec02g1072 438 FunFam protein indeterminate-domain 5, chloroplastic-like 111 190 - -
Cec02g1072 438 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 159 197 - -
Cec02g1072 438 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 94 128 - -
Cec02g1072 438 Gene3D Classic Zinc Finger 53 80 - -
Cec02g1072 438 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cec02g1072 438 MobiDBLite consensus disorder prediction 395 409 - -
Cec02g1072 438 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Cec02g1072 438 MobiDBLite consensus disorder prediction 387 416 - -
Cec02g1072 438 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 426 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0249 Cec-Chr2:2348681 Cec02g1072 Cec-Chr2:20380393 6.90E-87 dispersed
Cec02g1072 Cec-Chr2:20380393 Cec09g0710 Cec-Chr9:6352375 4.30E-89 dispersed
Cec02g1072 Cec-Chr2:20380393 Cec07g1494 Cec-Chr7:30546187 5.10E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29040 PF00096 zf-C2H2 0.0018 CL0361 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1072 K25870 - csv:101211656 625.55