Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1139 ATGGGTTTCATGTGTGATTTTTGTGGGGATCAAAGGTCAATGGTGTACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCGTGTGATCGTAATGTCCATTCAGCTAACGCCTTGTCGAGGCGTCATACACGAACGCTGCTGTGTGAAAGATGCCATTCACAACCCTCCATGGTAAGGTGTATTGATGAGAGGCTTTCTCTCTGTCAAAATTGTGACTGGACAGGTCATGGCACATCTACCCTTGCTTCCTCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCATCAGCTGCAGAACTTTCTTCCATATGGTCCTTTGTTTTGGATGTTCCCTCTGTAAATGATGCTTGTGAGAAAGAGTTGGGATTGATGAGCATTGCTGAGACTGATTTGATGGGCACCTGGAGCCTTTCAGAGAACAACGCCGGTCAAAGAATGCCTGGGTCAACTGAAGCCAGTAATGTTTGCAGCAGGGAAAAGTCAAATGCTTTGATTGGATCATCTTCACTCATTGATTTTGGCTCTAGGCCTCACACTTCAGATCAGCCAGTTGAATTGGCTAATGTGGCTTTACCTAAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAATTCTGTGGTGAGGACGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGAGCTATTTAGTATGAGCCTTAATCATTCTGAAGAATTTTTCGAGAATGGTGGAATTGATAGCTTTTTTGAGGCAAAAGTTCTGTCTTTTGAAGATTCAGTTTGCCACAGTGCTGTTGCTGCGGAGGGTTCTTCCATCGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAACGGTGCCTCTGCTGACTCAGTGATGAGTGCTAAAACTGAACCGGTTCTCTGTTTTAATTCAAGGCAAGCCCAATCGGGTGTGTCGTTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGATCATCAAGACTGTGGAGCCTCTTCGATGCTCCTAATGGGTGAGCCTCCATGGTGTGCCCCTGGCACTGAAAGTTCCTTCCCATCTTCTGATCGTAATAGCGCTGTTCTGCGTTATAAGGAGAAAAAGAAGACGCGCAAGTTTGAGAAAACAGTGAGATACGCGACTCGCAAAGCGAGAGCTGATGTCAGAAGGCGTGTGAAGGGACGGTTTGTGAAGGCTGGAGAGGCCTATGATTACGACCCACTGAACCAGGCTAGAAGCTGCTGA 1254 46.17 MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHSQPSMVRCIDERLSLCQNCDWTGHGTSTLASSSHKRQTINCYSGCPSAAELSSIWSFVLDVPSVNDACEKELGLMSIAETDLMGTWSLSENNAGQRMPGSTEASNVCSREKSNALIGSSSLIDFGSRPHTSDQPVELANVALPKFCCPGTKVAEFCGEDDDLYKEFDMDEMDLNLENYEELFSMSLNHSEEFFENGGIDSFFEAKVLSFEDSVCHSAVAAEGSSIGVVKPMQPACSNGASADSVMSAKTEPVLCFNSRQAQSGVSFSGLTGESSAGDHQDCGASSMLLMGEPPWCAPGTESSFPSSDRNSAVLRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQARSC 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25996311 25999411 - CePI673135_02g011390.1 Cec02g1139 196192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1139 417 Pfam CCT motif 360 402 IPR010402 GO:0005515(InterPro)
Cec02g1139 417 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cec02g1139 417 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cec02g1139 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 407 - -
Cec02g1139 417 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cec02g1139 417 ProSiteProfiles CCT domain profile. 360 402 IPR010402 GO:0005515(InterPro)
Cec02g1139 417 CDD Bbox1_BBX-like 47 91 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0317 Cec-Chr2:2900842 Cec02g1139 Cec-Chr2:25996311 3.60E-122 dispersed
Cec02g0874 Cec-Chr2:10861041 Cec02g1139 Cec-Chr2:25996311 5.20E-33 dispersed
Cec02g1139 Cec-Chr2:25996311 Cec05g2456 Cec-Chr5:35732402 9.70E-14 dispersed
Cec02g1139 Cec-Chr2:25996311 Cec11g1272 Cec-Chr11:26687121 1.20E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29043 PF06203 CCT 6.50E-16 CL0281 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1139 - - - 0.0