Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1160 ATGGATTTCTCTCTCAAGTCTTTCAAATCTCATGCCTCTTACAAGTATGTGAGGAAGCTTTCTGGGGCAGATGCTACTCAAGATCAAGAGCAACTTCCCATTCTTTCCCATCAGCACCACTCCACTATGGCGGTCTCTGATGCATCTGATCGGAAAGAGTTTATCGTCAAGGTCGACCAGGCCGATGCTTCGAGTAATGCTTCGTTGAGAGCTATGGAGCTGCTGAACACCAGTGGGAGGATTTGGCGGGAGTCCAGCTATGATTTCTGGAATGATAGTGATAATAGACGGAATAATGGTGAAGTTATTAGTGGAGACGGTGGTGGTAGGAGTGAGGATTTTGAGTTTAGGCAAGACAGGAAGGGTGTGGAAGATCCGCCGTCGAAGCTTATTGGACAGTTTCTTCACAAGCAGAAGGCGTCGGGAGAGATGTCTTTAGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTTTGCTTCCTGCGGTGGCGGAATCTCCGATGCGACGGAGCTCGAGAGAGTTGAAGGTCGCGTTCGAGTCTATTTCAGAAATTTCTGAAAACGATTCGATGCGAAGACGGCACAGAGACTCTCCGCCTGTTGAAGAAGAACATAGAGTACAGCAACCGCAGCAGCGTGATCGTCGAGCGTATGGCAGCAATGGTGAAGATGATAGTGCTGCTGAGGTCTTGAGATGCACATCTAATTCGTCCTTCGATAGAGATGTACCGTTCCAGAGGAAATCTAGCTTGCCGAGGGCTAAAACTAAGTCTAGATTGCTGGATCCACCTGAACACCAAGACCGGAGGTCAGGGCGTGTACCAAAATCAGGGCAAGTTCGCTCTGGTTTATTGTCAAAAACCTTAGATGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCAGATGAGTATAAGAAAGCTAATCTCGGTGTTCTGACTCTGTTACAGTGGGCGAGTTTGATTTTGATAATCGCAGCATTGATTTGCACTTTGACAATTCGTTACTGGAGGAGAAAGAAACTATGGAAGCTTGAACTATGGAAATGGGAGGTTATGATTCTTGTTCTGATATGTGGAAGGCTGGTTTCTGGTTGGGGGATTAGGATAATCGTCTTCTTCATTGAAAGGAACTTTCTACTGCGTAAGAGGGTTCTATACTTTGTTTACGGAGTCAGAAAGGCCGTCCAGAATTGTCTTTGGTTGGGTCTAGTTTTAATTGCTTGGAACTTCCTGTTTGATGAAAAAGTTCAAAGAGAAGTAAAAAGCAATGTCCTAGAGTACGTGACCAAAGTATTGGTATGTCTTCTTGTAAGCACTTTGGTTTGGCTTGTAAAAACGCTGATGGTGAAGGTTTTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAAGATGCATTGTTTAACCAATATGTAATTGAGACACTGTCAGGGCCTCCATTGATAGAGATTCAGAAGAACGAGGAAGAAGAAGAGAGACTTGCAGAAGAGGTTACAAAGTTACAGAACGCAGGGGCTACCATCCCTCCTGATTTAAGGGCAACTGCCTTTTCAACAACTCAAAAGGGTGTGAGGGTGATAGGGAGTGGAAGGTTGCAGAAAAGCCCTCGTGGAAGAAGTGACAAGCTATCTAGGACACTGTCTAAAGAGGGTGATGAGGGTATAACAATTGATCACTTGCATAAGCTTAATCCTAAGAATGTGTCTGCTTGGAACATGAAGAGGTTGATGAACATCGTTAGACATGGGGCCCTTTCAACTTTGGATGAACAGATAAAAGATTCAACTCATGAGGACGAATCGACAACGCAGATCAAGAGTGAATATGAGGCAAAAGTTGCTGCTAAGAAGATTTTTCTGAACGTGGCTAGGCATGGTTCTAAATATATCTACCTAGAGGACTTGATGCGTTTCATGGAAAAAGATGAGGCTTCAAAAACCATGGGTCTCTTTGAAGGAGCATGTGAGAGTAGGAAAATAAGCAAATCGTCATTGAAAAATTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCCCTAGCTTTGACATTAAACGATACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTCATTATTCTGGTTATTTGGCTATTGATTCTGGGTATAGCCACTAGCAAGTTTCTCCTATTCGTGACCTCTCAACTTGTCCTTGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTCGAATCAATCATCTTCCTATTTGTGATGCATCCATTTGATGTCGGAGACCGATGCGAAATTGATGGTGTGCAGATGATTGTAGAAGAAATGAACATTTTGACGACCAGTTTTCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGTGTTCTCGCGACGAAGGCTATCCACAACTTCTATCGTAGTCCTGATATGGGAGATGCTGTGGAATTCTGTCTTCACATATGTACTCCGCCTGAGAAAATTGCTATTATGAGACAAAGAATAATAAGTTTCATCGAGAGCAAGAAAGAGCATTGGTGTCCTGCTCCATTGATTGTCCTCAAGGATGTAGAAGAGTTGAATAGAATGAGAATAGCAATATGGCTTACTCATAGAATGAACCATCAAGACATGGGGGAGAGGTGGACAAGGAGAGCTCTTTTGGTCGAAGAACTTGTTAAAATTTTCCAAGAGCTTGACCTGCAATACCGTCTCCTACCGCTCGATATCAATGTCCGTTCTTTGCCTCCAGTGAACTCTACTAGTCTTCCTTCAAGATAA 2793 43.18 MDFSLKSFKSHASYKYVRKLSGADATQDQEQLPILSHQHHSTMAVSDASDRKEFIVKVDQADASSNASLRAMELLNTSGRIWRESSYDFWNDSDNRRNNGEVISGDGGGRSEDFEFRQDRKGVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTLLPAVAESPMRRSSRELKVAFESISEISENDSMRRRHRDSPPVEEEHRVQQPQQRDRRAYGSNGEDDSAAEVLRCTSNSSFDRDVPFQRKSSLPRAKTKSRLLDPPEHQDRRSGRVPKSGQVRSGLLSKTLDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALICTLTIRYWRRKKLWKLELWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDEKVQREVKSNVLEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVTKLQNAGATIPPDLRATAFSTTQKGVRVIGSGRLQKSPRGRSDKLSRTLSKEGDEGITIDHLHKLNPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSTHEDESTTQIKSEYEAKVAAKKIFLNVARHGSKYIYLEDLMRFMEKDEASKTMGLFEGACESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFESIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTSFLRYDNQKIIFPNSVLATKAIHNFYRSPDMGDAVEFCLHICTPPEKIAIMRQRIISFIESKKEHWCPAPLIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTSLPSR 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27111127 27115031 + CePI673135_02g011600.1 Cec02g1160 196213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1160 930 MobiDBLite consensus disorder prediction 188 224 - -
Cec02g1160 930 MobiDBLite consensus disorder prediction 188 229 - -
Cec02g1160 930 Coils Coil 490 513 - -
Cec02g1160 930 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 35 929 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Cec02g1160 930 SUPERFAMILY Sm-like ribonucleoproteins 750 809 IPR010920 -
Cec02g1160 930 MobiDBLite consensus disorder prediction 535 556 - -
Cec02g1160 930 MobiDBLite consensus disorder prediction 108 126 - -
Cec02g1160 930 MobiDBLite consensus disorder prediction 541 556 - -
Cec02g1160 930 MobiDBLite consensus disorder prediction 243 282 - -
Cec02g1160 930 MobiDBLite consensus disorder prediction 94 128 - -
Cec02g1160 930 FunFam Predicted mechanosensitive ion channel 760 809 - -
Cec02g1160 930 Pfam Mechanosensitive ion channel, beta-domain 749 809 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cec02g1160 930 Gene3D - 760 809 IPR023408 -
Cec02g1160 930 PIRSF Memb_At2g17000 37 930 IPR016688 -
Cec02g1160 930 MobiDBLite consensus disorder prediction 260 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0406 Cec-Chr2:3832231 Cec02g1160 Cec-Chr2:27111127 0.00E+00 dispersed
Cec02g1160 Cec-Chr2:27111127 Cec03g1583 Cec-Chr3:33952431 4.60E-149 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1160 K22048 - csv:101210264 1580.84