Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1160 ATGGATTTCTCTCTCAAGTCTTTCAAATCTCATGCCTCTTACAAGTATGTGAGGAAGCTTTCTGGGGCAGATGCTACTCAAGATCAAGAGCAACTTCCCATTCTTTCCCATCAGCACCACTCCACTATGGCGGTCTCTGATGCATCTGATCGGAAAGAGTTTATCGTCAAGGTCGACCAGGCCGATGCTTCGAGTAATGCTTCGTTGAGAGCTATGGAGCTGCTGAACACCAGTGGGAGGATTTGGCGGGAGTCCAGCTATGATTTCTGGAATGATAGTGATAATAGACGGAATAATGGTGAAGTTATTAGTGGAGACGGTGGTGGTAGGAGTGAGGATTTTGAGTTTAGGCAAGACAGGAAGGGTGTGGAAGATCCGCCGTCGAAGCTTATTGGACAGTTTCTTCACAAGCAGAAGGCGTCGGGAGAGATGTCTTTAGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTTTGCTTCCTGCGGTGGCGGAATCTCCGATGCGACGGAGCTCGAGAGAGTTGAAGGTCGCGTTCGAGTCTATTTCAGAAATTTCTGAAAACGATTCGATGCGAAGACGGCACAGAGACTCTCCGCCTGTTGAAGAAGAACATAGAGTACAGCAACCGCAGCAGCGTGATCGTCGAGCGTATGGCAGCAATGGTGAAGATGATAGTGCTGCTGAGGTCTTGAGATGCACATCTAATTCGTCCTTCGATAGAGATGTACCGTTCCAGAGGAAATCTAGCTTGCCGAGGGCTAAAACTAAGTCTAGATTGCTGGATCCACCTGAACACCAAGACCGGAGGTCAGGGCGTGTACCAAAATCAGGGCAAGTTCGCTCTGGTTTATTGTCAAAAACCTTAGATGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCAGATGAGTATAAGAAAGCTAATCTCGGTGTTCTGACTCTGTTACAGTGGGCGAGTTTGATTTTGATAATCGCAGCATTGATTTGCACTTTGACAATTCGTTACTGGAGGAGAAAGAAACTATGGAAGCTTGAACTATGGAAATGGGAGGTTATGATTCTTGTTCTGATATGTGGAAGGCTGGTTTCTGGTTGGGGGATTAGGATAATCGTCTTCTTCATTGAAAGGAACTTTCTACTGCGTAAGAGGGTTCTATACTTTGTTTACGGAGTCAGAAAGGCCGTCCAGAATTGTCTTTGGTTGGGTCTAGTTTTAATTGCTTGGAACTTCCTGTTTGATGAAAAAGTTCAAAGAGAAGTAAAAAGCAATGTCCTAGAGTACGTGACCAAAGTATTGGTATGTCTTCTTGTAAGCACTTTGGTTTGGCTTGTAAAAACGCTGATGGTGAAGGTTTTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAAGATGCATTGTTTAACCAATATGTAATTGAGACACTGTCAGGGCCTCCATTGATAGAGATTCAGAAGAACGAGGAAGAAGAAGAGAGACTTGCAGAAGAGGTTACAAAGTTACAGAACGCAGGGGCTACCATCCCTCCTGATTTAAGGGCAACTGCCTTTTCAACAACTCAAAAGGGTGTGAGGGTGATAGGGAGTGGAAGGTTGCAGAAAAGCCCTCGTGGAAGAAGTGACAAGCTATCTAGGACACTGTCTAAAGAGGGTGATGAGGGTATAACAATTGATCACTTGCATAAGCTTAATCCTAAGAATGTGTCTGCTTGGAACATGAAGAGGTTGATGAACATCGTTAGACATGGGGCCCTTTCAACTTTGGATGAACAGATAAAAGATTCAACTCATGAGGACGAATCGACAACGCAGATCAAGAGTGAATATGAGGCAAAAGTTGCTGCTAAGAAGATTTTTCTGAACGTGGCTAGGCATGGTTCTAAATATATCTACCTAGAGGACTTGATGCGTTTCATGGAAAAAGATGAGGCTTCAAAAACCATGGGTCTCTTTGAAGGAGCATGTGAGAGTAGGAAAATAAGCAAATCGTCATTGAAAAATTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCCCTAGCTTTGACATTAAACGATACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTCATTATTCTGGTTATTTGGCTATTGATTCTGGGTATAGCCACTAGCAAGTTTCTCCTATTCGTGACCTCTCAACTTGTCCTTGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTCGAATCAATCATCTTCCTATTTGTGATGCATCCATTTGATGTCGGAGACCGATGCGAAATTGATGGTGTGCAGATGATTGTAGAAGAAATGAACATTTTGACGACCAGTTTTCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGTGTTCTCGCGACGAAGGCTATCCACAACTTCTATCGTAGTCCTGATATGGGAGATGCTGTGGAATTCTGTCTTCACATATGTACTCCGCCTGAGAAAATTGCTATTATGAGACAAAGAATAATAAGTTTCATCGAGAGCAAGAAAGAGCATTGGTGTCCTGCTCCATTGATTGTCCTCAAGGATGTAGAAGAGTTGAATAGAATGAGAATAGCAATATGGCTTACTCATAGAATGAACCATCAAGACATGGGGGAGAGGTGGACAAGGAGAGCTCTTTTGGTCGAAGAACTTGTTAAAATTTTCCAAGAGCTTGACCTGCAATACCGTCTCCTACCGCTCGATATCAATGTCCGTTCTTTGCCTCCAGTGAACTCTACTAGTCTTCCTTCAAGATAA 2793 43.18 MDFSLKSFKSHASYKYVRKLSGADATQDQEQLPILSHQHHSTMAVSDASDRKEFIVKVDQADASSNASLRAMELLNTSGRIWRESSYDFWNDSDNRRNNGEVISGDGGGRSEDFEFRQDRKGVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTLLPAVAESPMRRSSRELKVAFESISEISENDSMRRRHRDSPPVEEEHRVQQPQQRDRRAYGSNGEDDSAAEVLRCTSNSSFDRDVPFQRKSSLPRAKTKSRLLDPPEHQDRRSGRVPKSGQVRSGLLSKTLDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALICTLTIRYWRRKKLWKLELWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDEKVQREVKSNVLEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVTKLQNAGATIPPDLRATAFSTTQKGVRVIGSGRLQKSPRGRSDKLSRTLSKEGDEGITIDHLHKLNPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSTHEDESTTQIKSEYEAKVAAKKIFLNVARHGSKYIYLEDLMRFMEKDEASKTMGLFEGACESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFESIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTSFLRYDNQKIIFPNSVLATKAIHNFYRSPDMGDAVEFCLHICTPPEKIAIMRQRIISFIESKKEHWCPAPLIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTSLPSR 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27111127 27115031 + CePI673135_02g011600.1 Cec02g1160 196213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1160 930 MobiDBLite consensus disorder prediction 188 224 - -
Cec02g1160 930 MobiDBLite consensus disorder prediction 188 229 - -
Cec02g1160 930 Coils Coil 490 513 - -
Cec02g1160 930 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 35 929 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Cec02g1160 930 SUPERFAMILY Sm-like ribonucleoproteins 750 809 IPR010920 -
Cec02g1160 930 MobiDBLite consensus disorder prediction 535 556 - -
Cec02g1160 930 MobiDBLite consensus disorder prediction 108 126 - -
Cec02g1160 930 MobiDBLite consensus disorder prediction 541 556 - -
Cec02g1160 930 MobiDBLite consensus disorder prediction 243 282 - -
Cec02g1160 930 MobiDBLite consensus disorder prediction 94 128 - -
Cec02g1160 930 FunFam Predicted mechanosensitive ion channel 760 809 - -
Cec02g1160 930 Pfam Mechanosensitive ion channel, beta-domain 749 809 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cec02g1160 930 Gene3D - 760 809 IPR023408 -
Cec02g1160 930 PIRSF Memb_At2g17000 37 930 IPR016688 -
Cec02g1160 930 MobiDBLite consensus disorder prediction 260 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1160 K22048 - - csv:101210264 1580.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0406 Cec-Chr2:3832231 Cec02g1160 Cec-Chr2:27111127 0.00E+00 dispersed
Cec02g1160 Cec-Chr2:27111127 Cec03g1583 Cec-Chr3:33952431 4.60E-149 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g220 . . . . . . . . . . . Cma20g00732 . Car20g00632 . Cpe04g00610 . Bhi05g01668 . . . Hepe02g0399 . . . . . . . . . . Cone8ag1305 . . Lsi10g00812 Csa07g00130 . . Blo04g00586 . . Bda14g00631 . . Bma03g00619 . . . Cmo20g00729 . . Car11g01388 . . . . . . . . . . Cla02g01085 Cam02g1162 Cec02g1160 Cco02g1208 Clacu02g1153 Cmu02g1115 Cre02g1419 Lsi11g01224 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0166 . 263 654 Mechanosensitive Ion Channel Family AT4G00290 67.3 5.7e-154 541.2
Cec08g1199 . 10 651 Mechanosensitive Ion Channel Family AT5G10490 58.4 4.8e-196 681.4
Cec10g0751 . 106 779 Mechanosensitive Ion Channel Family AT5G10490 55.3 1.1e-189 660.2
Cec08g1199 . 10 631 Mechanosensitive Ion Channel Family AT1G58200 57.7 2.0e-197 686.0
Cec10g0751 . 94 556 Mechanosensitive Ion Channel Family AT1G58200 65.2 8.3e-172 600.9
Cec02g1160 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 55.1 2.8e-260 895.2
Cec02g0406 . 90 939 Mechanosensitive Ion Channel Family AT1G53470 51.3 2.8e-236 815.5
Cec02g1160 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 52.9 4.4e-247 851.3
Cec02g1160 . 43 928 Mechanosensitive Ion Channel Family AT1G78610 58.6 5.2e-280 960.7
Cec02g0406 . 59 937 Mechanosensitive Ion Channel Family AT1G78610 56.2 1.1e-266 916.4
Cec02g1160 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.2 5.4e-237 817.8
Cec02g0406 . 266 934 Mechanosensitive Ion Channel Family AT2G17000 58.4 7.0e-221 764.2
Cec05g1740 . 69 721 Mechanosensitive Ion Channel Family AT5G19520 52.9 3.3e-182 635.6
Cec05g1740 . 64 721 Mechanosensitive Ion Channel Family AT5G12080 58.2 2.2e-202 702.6
Cec03g1583 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 53.6 8.6e-199 690.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67