Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1203 ATGGATCAACTAATTCAACGCGACGATCTTGTTCAGAATCCGGCCACACCCTCCACCTCCATTGTACCATGCATTGAACTTCCAGGCCACCCAATTCGTTCTCAATCCAACTCCAGGTTTGATGGGGAATTCAAGGATTCTGCAGCTGCTAGAAAAGTTCAGAAGGCTGACAGAGAGAAATTAAGAAGGGGTCGTTTGAATGAACAATTTGTCGAGCTGGGAAATATTTTAGATCCCGATAGGCCCAAAAATGACAAAGCAACCATTTTAATGGATACAATTCAATTGCTGAAGGATCTGACATCTCAAGTGAACAAATTGAAAACTGAACATGCTACTTTGATAGAAGAATCACACGAGCTAGCCCAGGAAAAGAGTGATCTGAGAGAAGAGAAGGCGTTGCTTACATCTGATATTGAGAATCTTAATGCTCAGTATCAGCAGAAGCTCAGGGCTACATACCCTTGGGCGACAATGGATCACTCGGTTGTCATGGCCCCTGCCCCCTTTCCATTTCCAGTGCCAATGCAAATGCCTCCAGGGCCATTTCCCTTGCATCCATCCTTGCAACCTTATACATTCTTTGGAAATCCGGATCCCAGGGTAATTGCAAACCCTTGTTCCACCTTCGTCCCATACATACCTCCAAGTTCCTTGACCGAGCAACAGTCCTCCCAAAATGCACCACCTTTCATTCAGTCAGGCAATCGGTCTGATAACTTCAGTGAGCAAAATTCCAGGAGCAAGTTCTCAGTTGAAAGCAAGATTGAGAAAAGTGTAGATTCCAATGAAGTTGCAACTTACCTAGAGTTGAAAACTCCTGGATCTTCCTCAGATCAGGATTCATCGTTTGAATGTTCAAACGGTAAGAACAGAAAGGAAAATAATCTATCAGAAGAGAGTTCTTCAAGTAGATGTTCTTCATCTTCTAGTTTAGGGGATAATTCGTCTAGTAGCACGCCAAATGGACGAAAATCTACTGATATATGTGGAAACCCATAA 1002 43.21 MDQLIQRDDLVQNPATPSTSIVPCIELPGHPIRSQSNSRFDGEFKDSAAARKVQKADREKLRRGRLNEQFVELGNILDPDRPKNDKATILMDTIQLLKDLTSQVNKLKTEHATLIEESHELAQEKSDLREEKALLTSDIENLNAQYQQKLRATYPWATMDHSVVMAPAPFPFPVPMQMPPGPFPLHPSLQPYTFFGNPDPRVIANPCSTFVPYIPPSSLTEQQSSQNAPPFIQSGNRSDNFSEQNSRSKFSVESKIEKSVDSNEVATYLELKTPGSSSDQDSSFECSNGKNRKENNLSEESSSSRCSSSSSLGDNSSSSTPNGRKSTDICGNP 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28309150 28311622 - CePI673135_02g012030.1 Cec02g1203 196256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1203 333 PANTHER TRANSCRIPTION FACTOR BHLH121 33 327 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Cec02g1203 333 MobiDBLite consensus disorder prediction 300 333 - -
Cec02g1203 333 Coils Coil 90 152 - -
Cec02g1203 333 MobiDBLite consensus disorder prediction 270 285 - -
Cec02g1203 333 Gene3D - 45 113 IPR036638 GO:0046983(InterPro)
Cec02g1203 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 100 IPR011598 GO:0046983(InterPro)
Cec02g1203 333 MobiDBLite consensus disorder prediction 218 257 - -
Cec02g1203 333 SMART finulus 56 106 IPR011598 GO:0046983(InterPro)
Cec02g1203 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 114 IPR036638 GO:0046983(InterPro)
Cec02g1203 333 MobiDBLite consensus disorder prediction 218 249 - -
Cec02g1203 333 MobiDBLite consensus disorder prediction 270 333 - -
Cec02g1203 333 CDD bHLH_AtILR3_like 55 129 - -
Cec02g1203 333 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1203 Cec-Chr2:28309150 Cec04g1733 Cec-Chr4:36367063 1.40E-52 dispersed
Cec02g1203 Cec-Chr2:28309150 Cec05g1652 Cec-Chr5:27116955 2.80E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29046 PF00010 HLH 1.30E-07 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1203 - - - 0.0