Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1263 ATGTCTGGTTCAAAGGAAGGAGTGATTATTGGAGAAAGAGAGCATAATGATGAAGAGCAGAGGAAGGACTATGTGGATCCGCCAGCAGCTCCATTGATGGGGTTCTCAGAGTTGAAGAAATGGTCGTTTTACAGAGCTGTAATTGCAGAGTTTATGGCAACATTACTTTTCCTTTATATCACCATAGCCACTGCCATTGGAAACAACAATGCACAAACAACAGGGCCCTGTTATGGCGTTGGGGTTCTGGGCATAGCATGGGCCTTCGGCGCCGTCATCTTCGTCCTTGTTTACTGCACCGCCGGTATTTCAGGCGGCCATATCAACCCCGCCATCACGTTCGGGATGCTGTTGGCCAGAAAGGTGTCGCTGATTCGCGCGGTGGCTTACATAGCGGCGCAGTCTCTGGGAGCCATTGCCGGCGTTGCATTGGTTAAAGCTCTCATGAGGCACGCTTACAACAGCAACGGCGGCGGAGCCAATGTCGTCGCCGCGGGGTTCAGCAAAGGCGCCGCCCTTGGCGCCGAGATCATCGGCACTTTTCTGCTGGTGTACACTGTATTCTCCGCCACTGACCCAAAAAGAAACGCCCGAGACTCCCATGTTCCTGTTTTGGCTCCATTGCCTATCGGACTTGCGGTCTTTGTAGTGCATCTAGCTACGATTCCGATCACCGGCACCGGCATCAACCCTGCTCGGAGCTTGGGCGCTGCCGTCATGTTCAACAACAGAAGAGTTTGGAGTCAACATTGGATATTTTGGGTTGGGCCATTTGTTGGGGCGTTGGCAGCGGCGGCGTACCATCAGTACGTTCTCAGAGCGGCGGCTGTCAAAGCTCTTGGATCCTTTCGTAGTAACCGTTCCGGCTAG 870 53.45 MSGSKEGVIIGEREHNDEEQRKDYVDPPAAPLMGFSELKKWSFYRAVIAEFMATLLFLYITIATAIGNNNAQTTGPCYGVGVLGIAWAFGAVIFVLVYCTAGISGGHINPAITFGMLLARKVSLIRAVAYIAAQSLGAIAGVALVKALMRHAYNSNGGGANVVAAGFSKGAALGAEIIGTFLLVYTVFSATDPKRNARDSHVPVLAPLPIGLAVFVVHLATIPITGTGINPARSLGAAVMFNNRRVWSQHWIFWVGPFVGALAAAAYHQYVLRAAAVKALGSFRSNRSG 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29263697 29267152 + CePI673135_02g012630.1 Cec02g1263 196316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1263 289 NCBIfam MIP family channel protein 49 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec02g1263 289 SUPERFAMILY Aquaporin-like 37 273 IPR023271 -
Cec02g1263 289 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Cec02g1263 289 Gene3D Glycerol uptake facilitator protein. 30 289 IPR023271 -
Cec02g1263 289 Pfam Major intrinsic protein 37 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec02g1263 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 14 285 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Cec02g1263 289 MobiDBLite consensus disorder prediction 1 23 - -
Cec02g1263 289 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec02g1263 289 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec02g1263 289 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec02g1263 289 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec02g1263 289 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec02g1263 289 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec02g1263 289 CDD MIP 45 271 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec02g1263 289 MobiDBLite consensus disorder prediction 8 23 - -
Cec02g1263 289 FunFam Probable aquaporin PIP1-2 30 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1263 Cec-Chr2:29263697 Cec02g2224 Cec-Chr2:39638513 2.20E-105 dispersed
Cec05g1274 Cec-Chr5:12427670 Cec02g1263 Cec-Chr2:29263697 1.30E-16 transposed
Cec02g0427 Cec-Chr2:4029701 Cec02g1263 Cec-Chr2:29263697 4.40E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1263 K09872 - gmx:100306103 437.958