Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1264 ATGAGGAGATTAGTCTTTCCTGTTGGAGATGAAGATGGCTGGAACTCTGGCATCAATTTTGCTAATTGGGCTCAAAACCACAATTTCACCAAAGGAGATTTTCTAGTTTTCAATTACTTAAAGAATGAACACAATGTGTATGAAGTTATTGAGGAGACATACAGATCATGTGATGCAACTGGCCATTGCTTGGGTGGAATGAGGTTTGGAATTGAGGAAGCCACCGCCATTCTAACAACTTTGATTAATCAGATGATGGTGCTCCGAAGTATAGTGGCGAACGCAAAAAGACAGCCAAAAGCAGAAAGGGATTCAGGTTCAGGTGGAGCAAGGAAGGATTCCCTGCCAAAGTCGCCCCGAAAACTTAGCGTTCCTTTGGCAAGTGCTGTTTCATCTAAACCTCTACGTGTTCCCCCAGAGGAAAAAACTTCCTTCGTTGAAGACTCTTTGACAGTTGAAGAGCAAAATAAGTTCTCTAACTTGATTCTAGTTTCTGCAAATGCCTTGATGGTTGAGGCTGATAATCTCCAAAAGCTCCGGAAAACCGACACTTCCTCAATTACTTCTGTGAAATCAAAAGAAGACATTAATACAAGGCATGAAATTTCTGAATTTGTACAAGAACCTTCAGTTCATGATGAGGAAGAAGGTGATCATAAAACTACTTTACCCAATATCACTAGCTTTCCTTTCCCCACAATGGCGCCTAATCATAAAGGAAGCGACGAGGAAGAGATTAAATCTGTATCATCTGAGCCCTCTGTACCTGTGGGGAAGTACTACGTTAAAGCAAGTTTAGCTCCCATTCTGCTATCAATCTTCAACAAGCATGGAGACATAGCGGCTTCATGTAAATTGGAATCGATTTCGATTCGTTCTTATTATCTGGAGTGTGTGTGCTATATCATTCATGAGTTGCAGTGCACAAAATTCTCTCAGAAGGTGTCCAAGTCCAAAGTTAGAGAACTCTTAGCCATCCTCAACGATGTAGTGTCTTCAGGAATGAATGTTGGTTGGTTGCATAGTATACTCAATGATATTGCAGAAACGGTTGAATCCAGCGGCCAAAAATGGACTCTGGAGGTGGCAAAGGCAAATTGCAACCACGAGTTGGAGCTGATCAAGAAAGAGCTCGAATCTCAAATGCAGGATTCGACACGAAAAGAAAAGGAAGTGAACGATGCAAAGGCAAAAGTTGCCGATACCAGAGCTCGCTTGAGTGAACTTGAGTTCAAATATTTTCAGCTGAACAAGGAGATTTTATCTCTACAGTTTAAGAACTCTCATGCAATTCTTCTCCGTTCTTCCCTAAACTCGAAGAGAATCTGTTCCCTTCTTCTTCGTGTTCTAACCCACGCGGAAAACCTAGCGCTCGGCTTGAATTTCGGTTTTGCATCGCAAGATTTGACTGGAAGTAGTTGTGCTATTGGAGTAAGAGAAGTTGTTGCAGAGATGTCTGATGAAGGAAGAGTACACCCTGATTGTAGAAATGCTTCTAATCCTTATCATGAATGTAGCGAGTACTGCTTTAAAGTAATAGCTGAAGTCAAAGCCCGGAATCAGAAAAATGAGCCAGTTCCCACTTCATCAGAAGCTGTTCAAGCTGGTCGAAGTAGTGGTTCTTCCAATTTTGTGCCTCCTGATGAGTATGAAGATCTTCATGATGAAAAGCCTGACGAAGAAGGGCACAGTGATGGTGATATTGACAAATTTAGTGGTGAGGAGAATGTGGAAGGAGACTTCACAAAGCTCACGGGGAGGAAAAAGAAATTGTTTGAAATTAGGCTTAAGATGAATGAGGCGCGAAAAGCTAATCAAACAGCAATCGCTGCTGAAAAAAAGAAAATGGAACCTCCATCAGAATCAAGAGGCATTTCTAAACAAAAGTGGCTTGAGGATCGGAAGAAGAAAATTGGGAAGCTTTTGGATGCAAATGGCTTGGATATGACAAAAGCATATATGTTAGATACACAAGAGGCTGCAGAGTCCAAATATAAGAAATGGGAGAAGGATCCAGCTCCCTATGGATGGGATGTCTTTAATCAGAAAACATTGTATAATGCATACAAAAAGAGGACGAAGAATGTAAATGTTGACCTTGAGGAATATAATAAAATGAAAGAATCTGATCCTGAGTTCTACCGTGAGGCTTCAAGTCTTCAGTATGGAAAGGCACCCAAGATTTCAGAGGATAAGATTGACAATATGGTGAAAGAACTCAAGGACCGGGACGAGAAGCGAAAGTCGTTTAGCCATACACTCTGGAGATCAAAAACAATCTTGAGCGAGGAACTGCATTACCTGATTAAGGATTTTCGGGGAAGTTTGGAATCCTAG 2337 41.34 MRRLVFPVGDEDGWNSGINFANWAQNHNFTKGDFLVFNYLKNEHNVYEVIEETYRSCDATGHCLGGMRFGIEEATAILTTLINQMMVLRSIVANAKRQPKAERDSGSGGARKDSLPKSPRKLSVPLASAVSSKPLRVPPEEKTSFVEDSLTVEEQNKFSNLILVSANALMVEADNLQKLRKTDTSSITSVKSKEDINTRHEISEFVQEPSVHDEEEGDHKTTLPNITSFPFPTMAPNHKGSDEEEIKSVSSEPSVPVGKYYVKASLAPILLSIFNKHGDIAASCKLESISIRSYYLECVCYIIHELQCTKFSQKVSKSKVRELLAILNDVVSSGMNVGWLHSILNDIAETVESSGQKWTLEVAKANCNHELELIKKELESQMQDSTRKEKEVNDAKAKVADTRARLSELEFKYFQLNKEILSLQFKNSHAILLRSSLNSKRICSLLLRVLTHAENLALGLNFGFASQDLTGSSCAIGVREVVAEMSDEGRVHPDCRNASNPYHECSEYCFKVIAEVKARNQKNEPVPTSSEAVQAGRSSGSSNFVPPDEYEDLHDEKPDEEGHSDGDIDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKANQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAESKYKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNVDLEEYNKMKESDPEFYREASSLQYGKAPKISEDKIDNMVKELKDRDEKRKSFSHTLWRSKTILSEELHYLIKDFRGSLES 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29268625 29286075 - CePI673135_02g012640.1 Cec02g1264 196317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1264 778 Pfam Arabidopsis phospholipase-like protein (PEARLI 4) 211 426 IPR007942 -
Cec02g1264 778 Pfam Plastocyanin-like domain 14 60 IPR003245 GO:0009055(InterPro)
Cec02g1264 778 MobiDBLite consensus disorder prediction 207 250 - -
Cec02g1264 778 MobiDBLite consensus disorder prediction 521 576 - -
Cec02g1264 778 ProSiteProfiles Phytocyanin domain profile. 4 61 IPR003245 GO:0009055(InterPro)
Cec02g1264 778 MobiDBLite consensus disorder prediction 522 545 - -
Cec02g1264 778 SUPERFAMILY Cupredoxins 5 71 IPR008972 -
Cec02g1264 778 MobiDBLite consensus disorder prediction 97 118 - -
Cec02g1264 778 PANTHER GCIP-INTERACTING PROTEIN P29 485 752 IPR013260 GO:0000974(PANTHER)|GO:0071013(PANTHER)|GO:0071014(PANTHER)
Cec02g1264 778 MobiDBLite consensus disorder prediction 548 576 - -
Cec02g1264 778 Coils Coil 364 412 - -
Cec02g1264 778 Gene3D - 4 76 IPR008972 -
Cec02g1264 778 MobiDBLite consensus disorder prediction 97 141 - -
Cec02g1264 778 MobiDBLite consensus disorder prediction 207 221 - -
Cec02g1264 778 Pfam SYF2 splicing factor 645 752 IPR013260 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1264 K12868 - - csv:101220459 539.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0059 Cec-Chr7:629033 Cec02g1264 Cec-Chr2:29268625 1.50E-06 transposed
Cec10g1298 Cec-Chr10:27141749 Cec02g1264 Cec-Chr2:29268625 3.50E-10 transposed
Cec02g0426 Cec-Chr2:4021477 Cec02g1264 Cec-Chr2:29268625 4.10E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g175 . . . . . . . . . . . Cma20g00745 . Car20g00647 . . . . . . . . . . . . . . . . . . Cone8ag1293 . . Lsi10g00502 . Chy11g00247 . . . . Bda14g00622 Bpe15g00805 . . . Sed01g0184 . Cmo20g00742 . . . . Cpe16g00322 . Bhi10g01832 Tan05g1117 Cmetu11g1432 . Hepe08g0303 . . Cla02g01176 Cam02g1255 Cec02g1264 Cco02g1303 Clacu02g1237 Cmu02g1204 Cre02g1519 . Csa02g01401 . Cme11g00372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005153 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 1 39