Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1266 ATGTCTACTGTGACATGGATCACGGTTAAGACATCCTGGGATACAAATGCAAATTTAAGAATAAGCCCCAAACTTTTATTGAACCCTCCGTTCAAAATCAGAGACCTTCTTTTTCGTCATCGCATCGCCTTCTTTCCTTCCAATCGACGACGATTCTCAGATTGCCTTTCTCTTGGCAGTTCTTCTTTCTCTTCCTTGAAACTTCAGATGGAGCAACAGGATTCTGTGGATAAGGAGTCTCTAATTGGTACTTGCAATAGAGATGGTGTTTCTTCAAGTGAAAATATCCACATCACAACTATAAATAATGATGAAACTAGAAGAAAAAATGAGAATACAAGCGACAAACCTAATATTCCACATATATACAGGCAAGATATTGTAAAAAGCAAAGGTAGTGGTATGATAGGGATTGTGACTGAAGTTGCTGGTGATGCTGATTCAGATAGTGATATTACTGATGATGAAGATGAAGATGATGACGGTGAGGATGGTGGGGATGATGATGGTTGTGATGATAATGATGGTGATGGAGAGAACGAAGGTCAAAACAAGGAAAATTATGGTGATGACAGTAATGCTAAAAATACCAACGGAGATAATTATAAGAGCCAACCTCTTCCTGATGACGAAGTTCGGGTCCTTTGGATGGATGAAAGTGAGACAACTCAGAATGTTAATGATTTAACAGTCATTGATAGGGGATTTGTACTCGGTGATTTTGTTGCTTCTGTTTCTGATCCAACTGGGCAAGCAGGTGTTGTGGTAGATGTTAATATCTCTGTTGATTTGTTGGCTCCTGATGGATCAATTATGAAAGATATATCATCTAAAAGCTTGAAACGTGTGAGAGATTTCACTGTGGGAGATTATGTGGTCCTTGGTCCATGGTTGGGTAGAATTGATGATGTATTGGATAATGTGACTGTGATGTTTGATGATGGCTCTAAGTGTAAGGTCACAAAGGCAGAGCCATTGCGGCTCAAACCAGTTTCTAAGAATATCCTTGAAGATGCAAACTTTCCTTACTATCCTGGTCAGCGTGTAAGGGCGAGTTCAACAGTTTTCAAGAATTCTAAATGGCTTTCTGGTTTATGGAAACCTAATCGCTTGGAAGGCACTGTCACTAAAGTTACAGTTGGTTCAGTGTTCATTTATTGGATAGCATCTGCTGGATATGGACCAGATTCGTCTACCACCCCAGCCGAAGAACAGACTCCAAAGAACTTAAGATTATTAACTTGTTTCTCACATGCAAATTGGCAGTTGGGTGACTGGTGTCTTCTTCCTCCTTCATCATTCTCCGCTGGCCTGACTAAGTACCCATCGCAAACAGAACTTTCTGATTCAGTAAACAACACATTAGATTCTGCACAACCGGTGGGTGCGTGTGATTCAGAGGATGCTGTGCTGGATGAATTAAGTGGGACAACTGAATCCACTGATCTTGATTCCGTCAGTGCATGCGATGGAAATTATAGGAATCCTGTGTATAATAGTTTGCCTGAATCTAGTAGTTCTAGAGCTCTCAAGGAGACTACCCATGAGACTTGGCCTCTACATCGCAAAAAAATTCGGAAAGTTGTCGTCAGGAGAGATAAGAAGGCTAGAAAGAAAGAGGAAAACTTTGAGAGGGCCCTTCTAATTATCAATACTAAGACAAAAGTTGATGTTGCATGGCAGGATGGCGGGACGGAACTTGGACTGGATTCAACAAGCTTGATTCCAATTGATAATCCAGGTGATCATGAATTTGTGCCGGAACAGTACGTGGTTGAGAAGGCCTCCGATAATGATGATGATGTTAGCGAAAGCAGACGAGTTGGAGTTGTGAAAAGTGTTCATGCAAAGGAGCGAACAGCTTGTGTGAGGTGGTTAAAACCAGTCTCCAGGGCAGAGGATCCTCGAGAATTTGACATAGAAGAAATTGTTAGTGTGTATGAGCTAGAGGGGCATCCAGATTATGACTACTGTTACGGTGATGTGGTTGTTCGATTGTCCCCTGTTTCTAATTCTGCAGAGGCAATGTCTTTGGGAATCAATACAGAGGAATTAAAGCAGCAGAGTTCAACGGACGAGATGATGAGTTGTTCAGAAAAGGCTTCAGGAAGCCAGAAAATAGAAGATCCATCATGTAGTGATGATTGCATCGACTTCTCAGATCTCTCTTGGGTTGGAAATATAACTGGTCTTAAGAATGGTGATATTGAAGTTACTTGGGCTAATGGCATGGTTTCAACGGTTGGCCCTCAAGCAATTTATGTTGTTGGTCGAGATGATGATGATGAATCAATTGCTGCTGGTAGTGAAGTAAGTAATGGTGGTGCAAGTTGGGAAACAGTTGATGATGATGAAATGGATTCTGTTGAGAATGCCAAGGAGGATATTGAACTGCAAGATACTGGTGCAAATTCTGAAGAGGAAGAAAGTGAACAGAATAATTCAGGAAGAAATCTAGCTCTTTCTGTTCCACTTGCTGCACTTCGATTTGTTACAAGATTGGCTGCTGGAATATTCTCACGAGGACCAAGAAATCCAGATTCAATGGATTTGGATTCCCACAGTGACAGTGAGACTCAATCCTTGGAAATTCAAGCTTCAGAGGAAAAAGATTCTGGGCTTCATTCTAGCTCTCTTAAATCCAACTCTTTTGATGCTTCTGATATGAACTCTGATTGTGGAAGAGAAGAGGATAATGTTGCTTCAGAGCCATCAGAAGTGTTAGAATCGGCAAAAGCTTCACGCAACCTGAGGACTGCAGAATCAGATGCTTCAGCATGCCACGAAGATGGCACCTGCAGCTTCAAAGGCTTTGATATAGCTAAAGATCCTTTGGACCATTATTTTCTTGGTACAAATGGACAAACTAACAATGGAAGGAAATGGCTCAAGAAAATCCAGCAAGATTGGAGTATCCTCCAGAATAATTTGCCAGATGGGATATACGTTCGAGTCTATGAAGACCGTATGGACCTTTTGAGAGCAGTCATTGTTGGGGCCTATGGGACCCCTTACCAAGATGGCCTCTTCTTCTTCGATTTTCACCTCCCACCAGAGTATCCTGACGTTCCGCCATCAGCATATTATCATTCAGGTGGGTGGCGGATAAATCCCAATCTTTATGAGGAAGGCAAAGTCTGCCTTAGCCTTCTAAATACTTGGACTGGCAGAGGAAATGAAGTGTGGGATCCGAAATCCTCTAGCATCCTTCAAGTGTTGGTCTCGCTTCAGGGATTAGTGTTGAATTCTAAACCGTATTTTAATGAAGCTGGATATGACAAGCAAGTTGGAACAGCAGAAGGAGAGAAAAATTCCTTGTCGTACAATGAAAACACTTTCTTATTAAACTGCAAGACAATAATGTATCTTATGAGGAAGCCTCCCAAGGACTTTGAAGAACTCGTTAAAGAACATTTCAGGAGGCGTGGATATTTCATCCTGAAGGCCTGTGATGCGTACATGAAAGGTCACTTAATTGGTTCTCTCACAGAAGATGCTTCTATAAGAGAAGAAAGTGATCCCAACTCGACTTCTGTCGGATTTAAGCTTATGCTCACTAAGATTATTCCAAAGCTCTTCTCATCATTGAACAAAGTCGGAGCTGATTGTCAAGATTTTAAGCATTTTCAACAGTTGTAG 3639 41.44 MSTVTWITVKTSWDTNANLRISPKLLLNPPFKIRDLLFRHRIAFFPSNRRRFSDCLSLGSSSFSSLKLQMEQQDSVDKESLIGTCNRDGVSSSENIHITTINNDETRRKNENTSDKPNIPHIYRQDIVKSKGSGMIGIVTEVAGDADSDSDITDDEDEDDDGEDGGDDDGCDDNDGDGENEGQNKENYGDDSNAKNTNGDNYKSQPLPDDEVRVLWMDESETTQNVNDLTVIDRGFVLGDFVASVSDPTGQAGVVVDVNISVDLLAPDGSIMKDISSKSLKRVRDFTVGDYVVLGPWLGRIDDVLDNVTVMFDDGSKCKVTKAEPLRLKPVSKNILEDANFPYYPGQRVRASSTVFKNSKWLSGLWKPNRLEGTVTKVTVGSVFIYWIASAGYGPDSSTTPAEEQTPKNLRLLTCFSHANWQLGDWCLLPPSSFSAGLTKYPSQTELSDSVNNTLDSAQPVGACDSEDAVLDELSGTTESTDLDSVSACDGNYRNPVYNSLPESSSSRALKETTHETWPLHRKKIRKVVVRRDKKARKKEENFERALLIINTKTKVDVAWQDGGTELGLDSTSLIPIDNPGDHEFVPEQYVVEKASDNDDDVSESRRVGVVKSVHAKERTACVRWLKPVSRAEDPREFDIEEIVSVYELEGHPDYDYCYGDVVVRLSPVSNSAEAMSLGINTEELKQQSSTDEMMSCSEKASGSQKIEDPSCSDDCIDFSDLSWVGNITGLKNGDIEVTWANGMVSTVGPQAIYVVGRDDDDESIAAGSEVSNGGASWETVDDDEMDSVENAKEDIELQDTGANSEEEESEQNNSGRNLALSVPLAALRFVTRLAAGIFSRGPRNPDSMDLDSHSDSETQSLEIQASEEKDSGLHSSSLKSNSFDASDMNSDCGREEDNVASEPSEVLESAKASRNLRTAESDASACHEDGTCSFKGFDIAKDPLDHYFLGTNGQTNNGRKWLKKIQQDWSILQNNLPDGIYVRVYEDRMDLLRAVIVGAYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQVGTAEGEKNSLSYNENTFLLNCKTIMYLMRKPPKDFEELVKEHFRRRGYFILKACDAYMKGHLIGSLTEDASIREESDPNSTSVGFKLMLTKIIPKLFSSLNKVGADCQDFKHFQQL 1212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29292801 29301615 - CePI673135_02g012660.1 Cec02g1266 196319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1266 1212 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 961 1121 IPR000608 -
Cec02g1266 1212 MobiDBLite consensus disorder prediction 847 875 - -
Cec02g1266 1212 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 109 1208 - GO:0061631(PANTHER)
Cec02g1266 1212 MobiDBLite consensus disorder prediction 797 817 - -
Cec02g1266 1212 MobiDBLite consensus disorder prediction 93 123 - -
Cec02g1266 1212 MobiDBLite consensus disorder prediction 147 177 - -
Cec02g1266 1212 MobiDBLite consensus disorder prediction 839 923 - -
Cec02g1266 1212 FunFam Probable ubiquitin-conjugating enzyme E2 23 925 1200 - -
Cec02g1266 1212 Pfam Ubiquitin-conjugating enzyme 966 1097 IPR000608 -
Cec02g1266 1212 SUPERFAMILY UBC-like 945 1128 IPR016135 -
Cec02g1266 1212 Gene3D Ubiquitin Conjugating Enzyme 928 1197 IPR016135 -
Cec02g1266 1212 MobiDBLite consensus disorder prediction 101 115 - -
Cec02g1266 1212 CDD UBCc 964 1114 IPR000608 -
Cec02g1266 1212 MobiDBLite consensus disorder prediction 141 208 - -
Cec02g1266 1212 SMART ubc_7 964 1121 - -
Cec02g1266 1212 MobiDBLite consensus disorder prediction 189 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1266 K10581 - - csv:101220698 2039.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1266 Cec-Chr2:29292801 Cec11g1851 Cec-Chr11:32714247 1.40E-84 dispersed
Cec02g1266 Cec-Chr2:29292801 Cec04g2009 Cec-Chr4:38244829 5.80E-176 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g177 . . . . . . . . . . Cma02g00267 Cma20g00742 . Car20g00644 . . . . . . . . . . . . . . . . . Cone12ag1239 Cone8ag1294 . . Lsi10g00504 . . . . . . . . . . . . Cmo02g00263 Cmo20g00740 . . . . . Cpe05g01365 Bhi10g01829 . . . Hepe08g0305 . . Cla02g01178 Cam02g1257 Cec02g1266 Cco02g1305 Clacu02g1239 Cmu02g1206 Cre02g1521 . Csa02g01403 . Cme11g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005071 2 3 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 41