Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1293 ATGTGGGATCTCAATGATTCTCCCGATCATGGCGGAACTGATGAATTTGAGGTTCTTTCATCGATTGATGGCGATGAAGACAGAGCGAAATGGATAGGATCCATTAATTCTAACTCAAGCTCTTCGGTGGTGGTTATGGAGGATGGATCCGACGCCGACGAGGCTAGCGTCGGCGAGGATGAACCACTAGTCCATCGGAAAAACTTCTCGGTGACCCACCCGCTGGCGACCCGGCAGTTCTTCCCCTTGGAGGATTCCGACGTCGGGGCATCATCGGCCGCCGTCGGTGGTTCAGCTACGTTCCCTCGAGCTCGGTGGGTCGGCGTGAAGTTCTGCCAAACAGAGCCTGTCGCTGCTGTGAGACCAATGGCGGTTCTGCAGCCGATAAAGAAAAGCCGGCGAGGGCCTAGGTCCCGGAGTTCTCAATACCGCGGCGTCACGTTCTACCGGCGCACCGGCCGGTGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGATTTGATACTGCTCATGCAGCTGCTCGAGCCTACGACAGGGCGGCTATAAAGTTTCGAGGATCAGAGGCAGACATAAATTTCAGTATTGAAGACTACGAGGAGGATTTGCAGCAGATGGGAAATTTGACTAAGGAAGAATTTGTGCATGTTCTTCGTAGACAAAGCACGGGTTATCCGAGAGGAACCTCAAAATTTAGAGGTGTAACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAGTTTTTAGGCAAAAAGTACGTTTATTTGGGGTTGTTCGATTCCGAGATCGAAGCTGCAAGAGCTTATGATAAAGCTGCAATCAAATGTAATGGCAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGGATGAGCTGAGTACAACTGAATCATCATCAGCCAAAGTCTGGGAACAGAATCTTGATTTGAGGTTGGGCAATTCAAGCTCAAAAAAACATACCCTTTCATTTGGGAATCATTGCCCAAATATCAACCCAAATATTGATTTGCAAATTACTAATGAATCTAACCCTCAGGAATCAAATATATTTGAGAATGATAATGGTGGAAGCTGTACGTTCCTTCAGACAGAGAAAATGCAGTTTCGTAGTGAAACGATCGTTCGATCTCCACCGTCCGTCGAAATGATGAAACATGGGCGCTTGGAGACACCCATGGAATTGCAGACTCTTCACAATTACTCTCCACAGATCAATCAATCAAACTCTGAAATTCAGTTGTTGAGCAGCAGCAATGAAGGAGGGTTAGGAAGTGATGAACTTTCACTGTGTTTGAGTGAAGGCCACCAATGGCAGCAATCTGGTGGCTCTCAACAATTTGCAAATGCTGCAGCATCATCAGGATTCCCACAACTTCAAATTTCAACTTCCCAAAATTGGCTGCAGAAAAGTAATGGATGCTTCTTACAGAGACCCTCTTGA 1461 47.02 MWDLNDSPDHGGTDEFEVLSSIDGDEDRAKWIGSINSNSSSSVVVMEDGSDADEASVGEDEPLVHRKNFSVTHPLATRQFFPLEDSDVGASSAAVGGSATFPRARWVGVKFCQTEPVAAVRPMAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGSEADINFSIEDYEEDLQQMGNLTKEEFVHVLRRQSTGYPRGTSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELSTTESSSAKVWEQNLDLRLGNSSSKKHTLSFGNHCPNINPNIDLQITNESNPQESNIFENDNGGSCTFLQTEKMQFRSETIVRSPPSVEMMKHGRLETPMELQTLHNYSPQINQSNSEIQLLSSSNEGGLGSDELSLCLSEGHQWQQSGGSQQFANAAASSGFPQLQISTSQNWLQKSNGCFLQRPS 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29578200 29581320 + CePI673135_02g012930.1 Cec02g1293 196346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1293 486 CDD AP2 142 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g1293 486 SUPERFAMILY DNA-binding domain 233 293 IPR016177 GO:0003677(InterPro)
Cec02g1293 486 FunFam AP2-like ethylene-responsive transcription factor 141 200 - -
Cec02g1293 486 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 53 348 - -
Cec02g1293 486 MobiDBLite consensus disorder prediction 42 61 - -
Cec02g1293 486 SUPERFAMILY DNA-binding domain 141 199 IPR016177 GO:0003677(InterPro)
Cec02g1293 486 CDD AP2 233 293 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g1293 486 FunFam AP2-like ethylene-responsive transcription factor 233 293 - -
Cec02g1293 486 SMART rav1_2 234 297 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g1293 486 SMART rav1_2 142 204 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g1293 486 ProSiteProfiles AP2/ERF domain profile. 142 198 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g1293 486 Gene3D AP2/ERF domain 141 200 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g1293 486 Gene3D AP2/ERF domain 233 292 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g1293 486 ProSiteProfiles AP2/ERF domain profile. 234 291 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g1293 486 Pfam AP2 domain 233 283 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g1293 486 Pfam AP2 domain 142 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g1293 486 PRINTS Ethylene responsive element binding protein signature 273 293 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g1293 486 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1293 Cec-Chr2:29578200 Cec10g2067 Cec-Chr10:35404544 3.10E-88 dispersed
Cec02g1293 Cec-Chr2:29578200 Cec04g1386 Cec-Chr4:33487867 6.00E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29050 PF00847 AP2 2.00E-09 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1293 K09284 - csv:101208665 795.423