Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec02g1293 | ATGTGGGATCTCAATGATTCTCCCGATCATGGCGGAACTGATGAATTTGAGGTTCTTTCATCGATTGATGGCGATGAAGACAGAGCGAAATGGATAGGATCCATTAATTCTAACTCAAGCTCTTCGGTGGTGGTTATGGAGGATGGATCCGACGCCGACGAGGCTAGCGTCGGCGAGGATGAACCACTAGTCCATCGGAAAAACTTCTCGGTGACCCACCCGCTGGCGACCCGGCAGTTCTTCCCCTTGGAGGATTCCGACGTCGGGGCATCATCGGCCGCCGTCGGTGGTTCAGCTACGTTCCCTCGAGCTCGGTGGGTCGGCGTGAAGTTCTGCCAAACAGAGCCTGTCGCTGCTGTGAGACCAATGGCGGTTCTGCAGCCGATAAAGAAAAGCCGGCGAGGGCCTAGGTCCCGGAGTTCTCAATACCGCGGCGTCACGTTCTACCGGCGCACCGGCCGGTGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGATTTGATACTGCTCATGCAGCTGCTCGAGCCTACGACAGGGCGGCTATAAAGTTTCGAGGATCAGAGGCAGACATAAATTTCAGTATTGAAGACTACGAGGAGGATTTGCAGCAGATGGGAAATTTGACTAAGGAAGAATTTGTGCATGTTCTTCGTAGACAAAGCACGGGTTATCCGAGAGGAACCTCAAAATTTAGAGGTGTAACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAGTTTTTAGGCAAAAAGTACGTTTATTTGGGGTTGTTCGATTCCGAGATCGAAGCTGCAAGAGCTTATGATAAAGCTGCAATCAAATGTAATGGCAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGGATGAGCTGAGTACAACTGAATCATCATCAGCCAAAGTCTGGGAACAGAATCTTGATTTGAGGTTGGGCAATTCAAGCTCAAAAAAACATACCCTTTCATTTGGGAATCATTGCCCAAATATCAACCCAAATATTGATTTGCAAATTACTAATGAATCTAACCCTCAGGAATCAAATATATTTGAGAATGATAATGGTGGAAGCTGTACGTTCCTTCAGACAGAGAAAATGCAGTTTCGTAGTGAAACGATCGTTCGATCTCCACCGTCCGTCGAAATGATGAAACATGGGCGCTTGGAGACACCCATGGAATTGCAGACTCTTCACAATTACTCTCCACAGATCAATCAATCAAACTCTGAAATTCAGTTGTTGAGCAGCAGCAATGAAGGAGGGTTAGGAAGTGATGAACTTTCACTGTGTTTGAGTGAAGGCCACCAATGGCAGCAATCTGGTGGCTCTCAACAATTTGCAAATGCTGCAGCATCATCAGGATTCCCACAACTTCAAATTTCAACTTCCCAAAATTGGCTGCAGAAAAGTAATGGATGCTTCTTACAGAGACCCTCTTGA | 1461 | 47.02 | MWDLNDSPDHGGTDEFEVLSSIDGDEDRAKWIGSINSNSSSSVVVMEDGSDADEASVGEDEPLVHRKNFSVTHPLATRQFFPLEDSDVGASSAAVGGSATFPRARWVGVKFCQTEPVAAVRPMAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGSEADINFSIEDYEEDLQQMGNLTKEEFVHVLRRQSTGYPRGTSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELSTTESSSAKVWEQNLDLRLGNSSSKKHTLSFGNHCPNINPNIDLQITNESNPQESNIFENDNGGSCTFLQTEKMQFRSETIVRSPPSVEMMKHGRLETPMELQTLHNYSPQINQSNSEIQLLSSSNEGGLGSDELSLCLSEGHQWQQSGGSQQFANAAASSGFPQLQISTSQNWLQKSNGCFLQRPS | 486 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 29578200 | 29581320 | + | CePI673135_02g012930.1 | Cec02g1293 | 196346 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec02g1293 | 486 | CDD | AP2 | 142 | 197 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g1293 | 486 | SUPERFAMILY | DNA-binding domain | 233 | 293 | IPR016177 | GO:0003677(InterPro) | |
Cec02g1293 | 486 | FunFam | AP2-like ethylene-responsive transcription factor | 141 | 200 | - | - | |
Cec02g1293 | 486 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 53 | 348 | - | - | |
Cec02g1293 | 486 | MobiDBLite | consensus disorder prediction | 42 | 61 | - | - | |
Cec02g1293 | 486 | SUPERFAMILY | DNA-binding domain | 141 | 199 | IPR016177 | GO:0003677(InterPro) | |
Cec02g1293 | 486 | CDD | AP2 | 233 | 293 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g1293 | 486 | FunFam | AP2-like ethylene-responsive transcription factor | 233 | 293 | - | - | |
Cec02g1293 | 486 | SMART | rav1_2 | 234 | 297 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g1293 | 486 | SMART | rav1_2 | 142 | 204 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g1293 | 486 | ProSiteProfiles | AP2/ERF domain profile. | 142 | 198 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g1293 | 486 | Gene3D | AP2/ERF domain | 141 | 200 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g1293 | 486 | Gene3D | AP2/ERF domain | 233 | 292 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g1293 | 486 | ProSiteProfiles | AP2/ERF domain profile. | 234 | 291 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g1293 | 486 | Pfam | AP2 domain | 233 | 283 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g1293 | 486 | Pfam | AP2 domain | 142 | 190 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g1293 | 486 | PRINTS | Ethylene responsive element binding protein signature | 273 | 293 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g1293 | 486 | PRINTS | Ethylene responsive element binding protein signature | 235 | 246 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec02g1293 | Cec-Chr2:29578200 | Cec10g2067 | Cec-Chr10:35404544 | 3.10E-88 | dispersed | |
Cec02g1293 | Cec-Chr2:29578200 | Cec04g1386 | Cec-Chr4:33487867 | 6.00E-132 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29050 | PF00847 | AP2 | 2.00E-09 | CL0081 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec02g1293 | K09284 | - | csv:101208665 | 795.423 |