Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1297 ATGTTCAAGGAATTAGGGACCTGTGATCTTCATCCTCAACATGGGTTATCCAAGGTTTGCATTCTCATGTCACTAAAAAATCGTTGGGGCCAAGAACATGAAGGGATAGACCTTCAAATACTTAGGTTCTTGGATATGGGCAAGATGGAAGCTAAAATTCATGATCTTAAGGTGCCTCTAAATCCACGGGGCCTCAATAATGAAGACAGAGCAGTAGAAATCATAGAAGCCGGAGGATTCCCCGGCGACGAATTTTCAGAACAAGGCATTGCAGCAACATGTCGTCTAAGAGTCCCAAGAATAGGCTGCCCAGCCAAAGTCTGTTCTCTTCAAAAAGCCCTAGCCATGGTCCACGGCGTAAAACGAGCAACCGTAGTTCTCGAAATCGAAGAAGCCAAAGTCCTCTTCGATCCAAATTTAACCACAGAGACCCTAATCCTCACAGAAATCGACAATTCCGGCTTCGAAGCGGAGCTCATCTCCGCTGCAGACGAAGCCTACAAAGTTCACATAAAACTTAATCGAGCGAGCCCCGGAGACATGCCCGCCATCAAATCCTCTCTCGAGCAAGCTCCGGGAGTGAACTGTGTGGAAATGGAGGCGATAGGGCGGATGGTAGCCATCGGCTACGACCCTGATCGGACGGGTCCAAGGTGCCTTCTGCAGTTCCTGGAGAAGTATGGAGCAAGCTTGTATGTGCCTCCGAAGAGAAGAGATGTGGAGCAGCTTCAAGAAGCTTGTGCTTATAGGAATTTGTTCTTGCTGAGCTGCTTGTTTTCTGTTCCAGTGGTGGCTTTTGCAATGGTGCTTCCAATGCTTCCTCCTTATGGAGATTGGTTGAATTTTAGGGTTTGCAGTATGCTTACTGTTGGAATGGTTCTTAAATGGATCTTCTGCACTCCAGTCCAGTTCCTTGCTGGTCGCAGATTTTATGTAGGATCATACCGCGCATTACAACGGAAATCTGCAAATATGGATGTTTTGGTTGCTGTAGGCACCAATGCAGCTTACTTTTACTCAGTATACATAGTTTTTAAAGCATCCACTTCCAACTCTTTTAAGGGGAAAGATTTCTTTGAGACTAGCTCCATGTTGATCTCCTTCATTCTACTTGGAAAATATTTGGAGGTCATGGCCAAAGGCAAATCATCAGATGCTTTAGCACAGCTTGCTCATCTTGCTCCTGATACAGCTTGTTTGATGACCTTTGATGATCATGGAAATTTGCTATCAGAGGTGGAGATTGATACCCAACTCATACAGAGGAATGACATAATTAAGATTGTTCCTGGGGCAAAAGTTCCTGTTGATGGGGTTGTTATTAGTGGTGAAAGCAATGTGAATGAGAGTACAATTACAGGAGAAGCAAGATCCATTGGCAAATCAACTGGTGATAAGGTTATTGGAGGGACTGTCAATGAAAATGGATGCTTATTTGTTAAAACCACTCATGTTGGATCTGATACTACACTTTCTCGAATTGTACAACTCGTGGAATCGGCTCAGCTATCACGAGCCCCAGCTCAAAAATTAGCAGATCAGATATCGAAGTTCTTTGTTCCTGTTGTTGTTGTGGCAGCATCTGTGACATGGCTGGGATGGTTAATTTGTGGAGAACTTGGTTTATACCCCAAACATTGGATACCAAAAGGCATGGATGAGTTTGAACTTGCCCTGCAATTTGCCATTTCAGTGCTGGTGATTGCATGTCCATGTGCCCTTGGTTTAGCAACACCGACTGCGATCATGGTTGCGTCGGGAAAAGGTGCTTCTCTAGGTGTGCTCATTAAAGGGGCAAGTGCACTTCAAAATGCATACAAGGTGAAAACAGTAGTTTTTGACAAGACTGGAACTCTTACCGTTGGGAGGCCAGAGGTAGTTAGTGTTGTGCTTTTTTCTACATTTCCAATGCAGGAGCTCTGTGATGTAGCAATAGCAATTGAGTCAAACAGCGAACACCCTCTAGCAAAATCTGTAGTGGAGCATGCAAAGAAAATGAGAAAGAAGTTTGGGGCCCGAAGTGAATGTCGCAAACGCATCCAGAACTTCGAGGTGTTCCCGGGAGGAGGGGTTGGAGGAAGAATTGATAGAAAGACAGTTTTAGTAGGAAACAGAAGGCTCATGCGAGCTCACAACATTGTTGTTGGTCCTCAAGTTGATCGGTATGTTATAGAAAACGAGCGACTGGCTCAAACATGTGTCTTGGTGGCTATTAATGGCAGGGTAGCAGGAGGTTTTGGTGTTATAGATGCGCCAAAGCCTGGGACTAAAGCTGTCATATCATTTCTTCGTTCGATTGGCATCTCAACCATAATGGTCACCGGAGATAACTGGGCCACAGCCTTCGCGGTTGCAAGAGGGGTCGGGATTAGTGAAGTCTTTGCAGAGATGGATCCAATTGGAAAAGCTAACAAGATTAGATCCTTAAAGACGTCAGGGAATATTGTGGCAATGGTGGGAGATGGAGTAAATGACTCACATGCCTTAGCTGCAGCTGATGTCGGTATTGCAATTGGTGCTGGAACAAATATTGCTATTGAAGCAGCTGATATTGTTCTAATGCGAAGCAATTTAGAAGATGTGGTTACTGCTATAGATCTCTCAAGACAAACTGTTTATCGTATATGGCTTAACTACATTTGGGCTCTTGGCTACAATATCATCGGCATGCCTATTGCTGCCGGAATCCTATATCCCTTCTTTGGAATCCGATTGCCACCGTGGCTTGCCGGTGCCTGTATGGCTGCTTCCTCCCTTAGTGTTGTATGTTCTTCTCTCTTATTGAAATGTTATAGGAGACCCTTGAGTTTTCAATCCACTTGA 2823 44.74 MFKELGTCDLHPQHGLSKVCILMSLKNRWGQEHEGIDLQILRFLDMGKMEAKIHDLKVPLNPRGLNNEDRAVEIIEAGGFPGDEFSEQGIAATCRLRVPRIGCPAKVCSLQKALAMVHGVKRATVVLEIEEAKVLFDPNLTTETLILTEIDNSGFEAELISAADEAYKVHIKLNRASPGDMPAIKSSLEQAPGVNCVEMEAIGRMVAIGYDPDRTGPRCLLQFLEKYGASLYVPPKRRDVEQLQEACAYRNLFLLSCLFSVPVVAFAMVLPMLPPYGDWLNFRVCSMLTVGMVLKWIFCTPVQFLAGRRFYVGSYRALQRKSANMDVLVAVGTNAAYFYSVYIVFKASTSNSFKGKDFFETSSMLISFILLGKYLEVMAKGKSSDALAQLAHLAPDTACLMTFDDHGNLLSEVEIDTQLIQRNDIIKIVPGAKVPVDGVVISGESNVNESTITGEARSIGKSTGDKVIGGTVNENGCLFVKTTHVGSDTTLSRIVQLVESAQLSRAPAQKLADQISKFFVPVVVVAASVTWLGWLICGELGLYPKHWIPKGMDEFELALQFAISVLVIACPCALGLATPTAIMVASGKGASLGVLIKGASALQNAYKVKTVVFDKTGTLTVGRPEVVSVVLFSTFPMQELCDVAIAIESNSEHPLAKSVVEHAKKMRKKFGARSECRKRIQNFEVFPGGGVGGRIDRKTVLVGNRRLMRAHNIVVGPQVDRYVIENERLAQTCVLVAINGRVAGGFGVIDAPKPGTKAVISFLRSIGISTIMVTGDNWATAFAVARGVGISEVFAEMDPIGKANKIRSLKTSGNIVAMVGDGVNDSHALAAADVGIAIGAGTNIAIEAADIVLMRSNLEDVVTAIDLSRQTVYRIWLNYIWALGYNIIGMPIAAGILYPFFGIRLPPWLAGACMAASSLSVVCSSLLLKCYRRPLSFQST 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29662631 29682420 + CePI673135_02g012970.1 Cec02g1297 196350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1297 940 NCBIfam HAD-IC family P-type ATPase 365 896 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cec02g1297 940 Gene3D - 380 502 - -
Cec02g1297 940 PRINTS Copper-transporting ATPase signature 521 535 - -
Cec02g1297 940 PRINTS Copper-transporting ATPase signature 382 400 - -
Cec02g1297 940 PRINTS Copper-transporting ATPase signature 310 329 - -
Cec02g1297 940 PRINTS Copper-transporting ATPase signature 796 813 - -
Cec02g1297 940 PRINTS Copper-transporting ATPase signature 892 906 - -
Cec02g1297 940 PRINTS Copper-transporting ATPase signature 362 381 - -
Cec02g1297 940 CDD HMA 96 158 IPR006121 GO:0046872(InterPro)
Cec02g1297 940 SUPERFAMILY HMA, heavy metal-associated domain 93 165 IPR036163 GO:0046872(InterPro)
Cec02g1297 940 Gene3D - 91 165 - -
Cec02g1297 940 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 65 936 - -
Cec02g1297 940 Gene3D - 579 875 IPR023214 -
Cec02g1297 940 PRINTS Copper-transporting ATPase 1 signature 288 308 - -
Cec02g1297 940 PRINTS Copper-transporting ATPase 1 signature 308 333 - -
Cec02g1297 940 PRINTS Copper-transporting ATPase 1 signature 119 142 - -
Cec02g1297 940 PRINTS Copper-transporting ATPase 1 signature 253 274 - -
Cec02g1297 940 PRINTS Copper-transporting ATPase 1 signature 93 118 - -
Cec02g1297 940 SUPERFAMILY HAD-like 610 925 IPR036412 -
Cec02g1297 940 ProSiteProfiles Heavy-metal-associated domain profile. 92 158 IPR006121 GO:0046872(InterPro)
Cec02g1297 940 FunFam Copper-transporting ATPase 1, putative 380 502 - -
Cec02g1297 940 CDD P-type_ATPase_Cu-like 253 915 - -
Cec02g1297 940 PRINTS P-type cation-transporting ATPase superfamily signature 612 626 - -
Cec02g1297 940 PRINTS P-type cation-transporting ATPase superfamily signature 744 755 - -
Cec02g1297 940 PRINTS P-type cation-transporting ATPase superfamily signature 766 776 - -
Cec02g1297 940 PRINTS P-type cation-transporting ATPase superfamily signature 842 854 - -
Cec02g1297 940 PRINTS P-type cation-transporting ATPase superfamily signature 448 462 - -
Cec02g1297 940 PRINTS P-type cation-transporting ATPase superfamily signature 819 838 - -
Cec02g1297 940 Gene3D - 619 697 IPR023299 GO:0000166(InterPro)
Cec02g1297 940 Gene3D - 698 750 IPR023299 GO:0000166(InterPro)
Cec02g1297 940 SUPERFAMILY Calcium ATPase, transmembrane domain M 360 604 IPR023298 -
Cec02g1297 940 ProSitePatterns E1-E2 ATPases phosphorylation site. 614 620 IPR018303 -
Cec02g1297 940 Pfam E1-E2 ATPase 411 590 - -
Cec02g1297 940 FunFam Probable copper-transporting ATPase HMA5 744 876 - -
Cec02g1297 940 SFLD C1.7: P-type atpase like 594 871 - -
Cec02g1297 940 SUPERFAMILY Calcium ATPase, transduction domain A 412 498 IPR008250 -
Cec02g1297 940 Pfam haloacid dehalogenase-like hydrolase 608 833 - -
Cec02g1297 940 NCBIfam heavy metal translocating P-type ATPase 325 928 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cec02g1297 940 SFLD p-type atpase 594 871 IPR044492 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1297 Cec-Chr2:29662631 Cec10g0935 Cec-Chr10:20610313 3.90E-95 dispersed
Cec01g0274 Cec-Chr1:2750086 Cec02g1297 Cec-Chr2:29662631 8.10E-245 transposed
Cec04g0574 Cec-Chr4:23846845 Cec02g1297 Cec-Chr2:29662631 6.90E-252 transposed
Cec04g2273 Cec-Chr4:40363961 Cec02g1297 Cec-Chr2:29662631 1.70E-192 transposed
Cec05g1746 Cec-Chr5:29055431 Cec02g1297 Cec-Chr2:29662631 4.00E-89 transposed
Cec02g1297 Cec-Chr2:29662631 Cec04g1453 Cec-Chr4:34114404 1.50E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1297 K17686 - csv:101214276 1502.26