Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec02g1303 | ATGGGGGACGAACAGCCCTCAGCCTCCAATCGGCGGAGGAGCCGAGGATCTGAGGCAGCTGCCCGACTTACGGCTCTCGAACGTCTCAAAGCCATCCGCAGCGGTGGCCGTCGATCTGAAGCTGGTGGTTTCCAAGTGAAGTTAGAAAACCCTATCTACGATACGATTCCAGAGGATGAGTATGATGCTCTCGTCGCAAAGCGTCGCGAAGAAGCCCGAGGGTTTATTGTCGATGACGACGGTCTTGGATATGGAGACGAAGGTGAGGAAGAAGATTGGTCGAAAGCTGGGGTTTGTTCTTCCGATGAGTCTGATGGTGAGCTAGATAAACCTAAGAAGAGGAAAGTAGAGAAGAAAGAGGCGCAACCTAAAAAACCCTCTTCTTCTTCTCTATCGGCGGCGGCAGCGATGATGGGGAAACAAAAGCTTTCTTCGATGTTTACTTCATCGATCTTCAGGAAAACGGCTAGAGACGATAAGGCTAAAGGATTGGCGTGTGATAGTATTGTGGATGATGTGATTGCGGAATTTGCGCCAGATGAGACTGATAGAGAGAGGCGTAGAAAGGGGCCAATTGGAGCTATACCGATTTCGAGGACTGTTGCGCCTGTTCCTGCTGTGAAGTCCGAGGGATTAACTGCTCAGAGTCTTAATTTGACTGGCGGGTCTGAATTGATTAAGGATAATGAAAATGGGAACTCTGGAATGACCAGGGTTGTGACAGACAGTGATTTAGAGCCTGTGCGAGCTGGTGTAGAGGTCCAGGGAAATGGTGAGACTAAGGAATTTGATCCGAAGGAGGACTTAAATTCTCAAACCAACTTGGACTCGGTTGAGCAATCACCTAATTCTTCGATCAAGGAAGATGTAAATGGGGATAGCATGCCAATTATGGTTGAAACGAAGGCAGAACCGTTAGTGAAGAAGGAGCCGGTGAGTACTTTGAATGCTAAGATTAGCAATGAAAGAGACCCAGCTTTGAGTGCTACTGCGGGATGGCAAGCAGTAAGAAGTGAAGGGAGTGGAAGTGTTAATTCTGCAGCAGAAACTGCTGAAGAGAAATCCGATTTTGATGTTGACGCCGACGGCTCTCTCCCTTTCTATATCGTTGATGCGCATGAGGAGCTCTTCGGTGCAAATATGGGCACTGTATATCTATTTGGGAAGGTCAAAGCTGGGGATACGTTCCACAGTTGTTGTGTGGTGGTGAAAAATATGCAAAGATGCATATATGCCATTCCTAGTGCTTCTTTTCTCCATTCGGATGAGATGTTGGAGCTTCAGAAGGACGCTGAACAGTCTAAGCTTTCTCCTGCAGATCTGCGTGCCAAATTGCAAGAAGTGACTGCAGGATTAAAAAATGAAATGGCTAAGCAGTTGTTAGATCTCAATGTTTCAACATTTAGCATGACACCGGTGAAGAGGAAGTATGCATTTGAGCGTCAAGACATACCTGCGGGGGAAAACTATGCTCTTAAGATTAATTACCCATTCAAGCACCCCTCACTTCCCGCTGATCTAAAAGGAGAATCTTTCTGTGCTCTTTTAGGAACACATCGCAGTGCCTTAGAGCTTCTCCTCATTAAAAGGAAAATTAAGGGCCCCTCCTGGTTGTCAATTTCAAAATTCTCTTCCTGTCCTGCTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAGTTGACTCCCCAAAAGATGTTCAAACTTCAACTTCATCAAGCAAAACTTTGGAGATTCCTTCTATGATTGTCACTGCAATACACATAAAGACCATCAGTAATGAAAGACAGAATGTCAACGAAATTGTGTCTGCATCTGTTATATGCTGTCAAAGAGCGAAGATTGACGGTCCCATGTTGGCCACAGAATGGAAAAAGCCTGGTATGCTTAGGCATTTTACTATCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAATCTGCAGATAGAAATTTGAAAGCTGGATCAAATGTTCTAATCTGCGAGGGCAATGAAAGGGCATTGTTAAATCGGTTAATGATTGAATTATTCAAATTGGATAGTGATGTGTTGGTTGGGCACAATATCTCTGGGTTTGACCTAGATGTTCTTCTCCATCGAGCCCAGTTTTGCCGAGTACCAAGCAGCATGTGGTCCAAAATAGGTCGCCTTAAGAGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGAGCATTTTTGGGTCTGGGGCAAGTCCAGGACTCATGTCTTGCATTGCTGGTCGACTCTTATGTGATACGTATTTGTCTTCCCGTGACCTATTGAAGGAGATAAGTTATTCTTTGACAGAGCTGGCAAAGACTCAACTTAATAAGGACCGCAAGGAAGTCACTCCACATGAAATTCCAAAAATGTATCAAGCATCAGAATCTCTCATGAACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTAACGTTTCATTTAAGCGTTCTTCCCCTTACTCGACAATTAACGAATATCAGTGGTAATCTCTGGGGAAGAAGCCTACAGGGTGCTAGGGCCCAAAGAGTAGAGTATCTCTTACTTCATGCATTCCATGCCAAAAAATATATTGTCCCCGACAAGACTTCATCTTATGCGAAGGAAAAAAAGATGGTAAAAAAGAGAACGAATCATAGTTCTGAGGAGAAAAATGTTGATGAATTTGATTTAGATGCAAATGTAGAAGCTCCCAATACTGAAAGTGGAAAAGGCAAAAAGGGGTCCTCCTATTCAGGTGGGCTAGTCTTGGAGCCAAAGCAAGGTTTATATGATAAGTATGTATTGCTCCTGGACTTCAACAGTCTTTACCCTTCCATCATTCAGGAATATAATATTTGCTTCACCACTGTTGAAAGATCTCCAGATGGTGTTGTTCCTCTACTGCCATCTAGTAAAGTGACTGGAGTTCTTCCTGAGTTGCTAAAAAATCTGGTTCAGAGGAGAAGAATGGTGAAGTCATGGATGAAGAATGCAACTGGTCTCAAGCTTCAGCAACTTGACATTCAGCAGCAGGCCCTAAAGCTCACTGCCAACAGTATGTATGGATGTCTAGGGTTTTCTAATTCAAGGTTTTATGCAAAACCACTAGCAGAGCTTATTACTTCACAAGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTCAAGAATAATCTGAACCTAGAGGTAATTTATGGCGATACGGATTCAATAATGATTCATAGTGGACTGGATGATATTGGCAAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGGTTAACAAAAAATACAAGTGCTTAGAAATTGATCTCGACGGTTTGTATAAGAGAATGTTGCTTCTCAAGAAAAAGAAATATGCTGCTGTAAAGTTGCAGTTTAAGGACGGAATGCCATATGAGGTTATTGAGCGAAAGGGTCTTGATATGGTTCGTCGTGACTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAATCAAATATTGTCTGGAGGGTCGTGCGAGGATGTCATTGAATCAATACATGACTCTCTTATGAAGATACAAGAGGATATGAGAAAAGGGCAAGTTGCACTTGAGAAATATATCATCACGAAGACATTGACTAAGCCACCTGAAGCTTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCTCAAAGGTTAAAACAAATGGGCTATTCTACTGGCTGTTCTGTTGGTGATACGATCCCATATATTATTTGCTGTGAGCAGGGGTCTACTTCTAGTGGTTCTACAAGCATTGCTCAACGGGCTAGACATCCTGATGAATTGAAAAAAGAGGATGGAAAATGGATGATTGACATCGAATACTACCTTTCACAGCAGATTCACCCTGTGGTCTCTCGTCTATGTGCCTCAATTCAGGGCACCAGCCCAGAACGCTTGGCTGACTGTTTGGGGCTTGATTCATCAAAGTTCCAGATCAGATCAAGTGAAGTTTCCCGAAGCGATGTCTCCACTTCCCTCCTGTGTTCTGGATGCATACCACTGACATTAACTTGCCCCAGCTGTTCTGGTACTTTTACGTGTCCTGCTGTCTTTAGTTCTGTATACAAATCAACAGATGGAAAGCAAGAAAAGTCAGTTGATGAACCTACAAGCAAATTTTGGAATAATTTGAATTGTCCAAAATGTCCTGACGAAGCTAATGCGGGTAGAATGACTCCTGGAATGATTGCCAACCAGGCAAAAAGGCAAGCAGATAGGTTCATTTCAATGTATTATAACGGCTTAATGATGTGTGATGATGAAACCTGCAACTATTCCACACGTGCCGTCAATCTTCGAGTTATGGGCGACTCTGAGAAAGGAACCATCTGCCCGAACTATCCCCACTGCAATGGGCATCTAGTAAGAAAGTACACAGAAGCCGATTTGTACAGGCAGCTTTCGTATTTCAGCCACATTTTGGATACCGAACGCTGTATGGAAAAGTTGGAGGTTCATGCAAGGGTGACTTTAGAGAAAGAAATGGCGAAAATTCGGCCAATAGTCGAGTTAGCTGCATCGACAATTCAAAGCATTCGGGATCGCAGTGCATATGGTTGGATGCAGTTGCAAAATTTTGTGGCCAACATGATAGCTCAATTTGGTAGTATCAACCTTGAGGTCCATACTACATAG | 4662 | 43.31 | MGDEQPSASNRRRSRGSEAAARLTALERLKAIRSGGRRSEAGGFQVKLENPIYDTIPEDEYDALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGVCSSDESDGELDKPKKRKVEKKEAQPKKPSSSSLSAAAAMMGKQKLSSMFTSSIFRKTARDDKAKGLACDSIVDDVIAEFAPDETDRERRRKGPIGAIPISRTVAPVPAVKSEGLTAQSLNLTGGSELIKDNENGNSGMTRVVTDSDLEPVRAGVEVQGNGETKEFDPKEDLNSQTNLDSVEQSPNSSIKEDVNGDSMPIMVETKAEPLVKKEPVSTLNAKISNERDPALSATAGWQAVRSEGSGSVNSAAETAEEKSDFDVDADGSLPFYIVDAHEELFGANMGTVYLFGKVKAGDTFHSCCVVVKNMQRCIYAIPSASFLHSDEMLELQKDAEQSKLSPADLRAKLQEVTAGLKNEMAKQLLDLNVSTFSMTPVKRKYAFERQDIPAGENYALKINYPFKHPSLPADLKGESFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSCPASQRVSWCKFEVIVDSPKDVQTSTSSSKTLEIPSMIVTAIHIKTISNERQNVNEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTIIRKLDGGIFPMGFAKESADRNLKAGSNVLICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQFCRVPSSMWSKIGRLKRSVMPKLGKGGSIFGSGASPGLMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVTPHEIPKMYQASESLMNLIEYGETDAWLSLELTFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKTSSYAKEKKMVKKRTNHSSEEKNVDEFDLDANVEAPNTESGKGKKGSSYSGGLVLEPKQGLYDKYVLLLDFNSLYPSIIQEYNICFTTVERSPDGVVPLLPSSKVTGVLPELLKNLVQRRRMVKSWMKNATGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVKNNLNLEVIYGDTDSIMIHSGLDDIGKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLNQILSGGSCEDVIESIHDSLMKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYSTGCSVGDTIPYIICCEQGSTSSGSTSIAQRARHPDELKKEDGKWMIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQIRSSEVSRSDVSTSLLCSGCIPLTLTCPSCSGTFTCPAVFSSVYKSTDGKQEKSVDEPTSKFWNNLNCPKCPDEANAGRMTPGMIANQAKRQADRFISMYYNGLMMCDDETCNYSTRAVNLRVMGDSEKGTICPNYPHCNGHLVRKYTEADLYRQLSYFSHILDTERCMEKLEVHARVTLEKEMAKIRPIVELAASTIQSIRDRSAYGWMQLQNFVANMIAQFGSINLEVHTT | 1553 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 29807425 | 29819457 | + | CePI673135_02g013030.1 | Cec02g1303 | 196356 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec02g1303 | 1553 | MobiDBLite | consensus disorder prediction | 76 | 137 | - | - | |
| Cec02g1303 | 1553 | CDD | DNA_polB_alpha_exo | 580 | 831 | - | - | |
| Cec02g1303 | 1553 | SUPERFAMILY | Ribonuclease H-like | 362 | 868 | IPR012337 | - | |
| Cec02g1303 | 1553 | Pfam | DNA Polymerase alpha zinc finger | 1339 | 1535 | IPR015088 | GO:0003887(InterPro)|GO:0006260(InterPro) | |
| Cec02g1303 | 1553 | Coils | Coil | 1093 | 1113 | - | - | |
| Cec02g1303 | 1553 | FunFam | DNA polymerase | 1334 | 1525 | - | - | |
| Cec02g1303 | 1553 | FunFam | DNA polymerase | 580 | 894 | - | - | |
| Cec02g1303 | 1553 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cec02g1303 | 1553 | Gene3D | - | 580 | 896 | IPR036397 | GO:0003676(InterPro) | |
| Cec02g1303 | 1553 | PRINTS | DNA-directed DNA-polymerase family B signature | 1012 | 1024 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Cec02g1303 | 1553 | PRINTS | DNA-directed DNA-polymerase family B signature | 936 | 949 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Cec02g1303 | 1553 | PRINTS | DNA-directed DNA-polymerase family B signature | 1065 | 1073 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Cec02g1303 | 1553 | NCBIfam | DNA polymerase (pol2) | 51 | 1297 | - | - | |
| Cec02g1303 | 1553 | MobiDBLite | consensus disorder prediction | 88 | 124 | - | - | |
| Cec02g1303 | 1553 | MobiDBLite | consensus disorder prediction | 880 | 919 | - | - | |
| Cec02g1303 | 1553 | MobiDBLite | consensus disorder prediction | 223 | 291 | - | - | |
| Cec02g1303 | 1553 | Pfam | DNA polymerase alpha subunit p180 N terminal | 26 | 93 | IPR024647 | - | |
| Cec02g1303 | 1553 | Pfam | DNA polymerase family B, exonuclease domain | 520 | 774 | IPR006133 | - | |
| Cec02g1303 | 1553 | MobiDBLite | consensus disorder prediction | 880 | 899 | - | - | |
| Cec02g1303 | 1553 | SMART | polmehr3 | 580 | 1079 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Cec02g1303 | 1553 | MobiDBLite | consensus disorder prediction | 270 | 290 | - | - | |
| Cec02g1303 | 1553 | Gene3D | - | 407 | 533 | - | - | |
| Cec02g1303 | 1553 | Gene3D | DNA Polymerase alpha, zinc finger | 1338 | 1524 | IPR038256 | - | |
| Cec02g1303 | 1553 | ProSitePatterns | DNA polymerase family B signature. | 1067 | 1075 | IPR017964 | GO:0000166(InterPro)|GO:0003676(InterPro) | |
| Cec02g1303 | 1553 | Gene3D | Helix hairpin bin | 977 | 1028 | - | - | |
| Cec02g1303 | 1553 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 14 | 1539 | - | GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER) | |
| Cec02g1303 | 1553 | Gene3D | Palm domain of DNA polymerase | 918 | 1123 | IPR023211 | - | |
| Cec02g1303 | 1553 | Gene3D | - | 1143 | 1329 | IPR042087 | - | |
| Cec02g1303 | 1553 | Gene3D | - | 367 | 566 | - | - | |
| Cec02g1303 | 1553 | MobiDBLite | consensus disorder prediction | 223 | 240 | - | - | |
| Cec02g1303 | 1553 | FunFam | DNA polymerase | 1143 | 1329 | - | - | |
| Cec02g1303 | 1553 | FunFam | DNA polymerase | 977 | 1026 | - | - | |
| Cec02g1303 | 1553 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Cec02g1303 | 1553 | Pfam | DNA polymerase family B | 840 | 1300 | IPR006134 | GO:0000166(InterPro)|GO:0003677(InterPro) | |
| Cec02g1303 | 1553 | SUPERFAMILY | DNA/RNA polymerases | 864 | 1315 | IPR043502 | - | |
| Cec02g1303 | 1553 | CDD | POLBc_alpha | 912 | 1315 | IPR045846 | GO:0003887(InterPro)|GO:1902975(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec02g1303 | Cec-Chr2:29807425 | Cec04g1199 | Cec-Chr4:31543331 | 3.10E-49 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec02g1303 | K02320 | - | csv:101211201 | 2761.87 |