Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1312 ATGCATTCCTTCTCTTTCATCTTGATTGAGTATGATATTGACGCAGGTGCAATGGGGGTATCATTACTTAAAGTGCTTCTTCGACATATATCATCATTTCTTCAACTTTCATCTTCTGACTACATTAATTTACAACCAACTCTGAAGTACTACCATAAAATAGAAGGGGTCTTGAAACTATTGAGACCAATTCTGGATGCCGTTGTCGATTCAGATATAGCTTCTGATGAAGAGCTTACTCAGGCATTTGAAGATCTTGATCATTCAGTGGATGAACTAAGGGTGCTGTTTGAAAATCGGCAACCGCTATCGAGTAAAGTATACTTTGTATTGCAAATTGAAGCATTGATATCAAAGATTGGGAAATTTAGCTTGGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAATCTTCCGGAGGAATTGAGTTCAACATCTCTTGAGCACTGTGTCCAAAAAATTAAGCATATTGGAAAGGAAGAAATATCTTTCGTTATTAAAGATGCCATAAGGAATCAAGTAGATGGCATTGCTCCCAGCTCAGATGTTTTGGTGAAACTTGCGGATTCCCTAAGCTTGAGATCAAATCAGGAGATCCTAATTGAGGCTGTGGCGCTTGAAAAGTTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGGAGAAGCTGAGGACATTGATCAAATGATTGCTCTTGTAACCCGAATGCATGAACGACTTATTATGATAAAGCAATCCCAAAGTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTCGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGAGTATTTATTAAAAATTGGATTGATCAGGGACTGAATGTTTGCCCGAAGACTAGACAGACATTGGTTCATACGAATCTTATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGACACAAACAATGTGAAATTGTCTGATCCCTCAAAGTCAGTGAACTTAAACCAGCTTTCCCCCCTTCTGGTTGGGAGCTTTGAGTCTGATACCCCTCGAGAACCCCGTTTTCCTCATTCCCCTGGCTACCAACCTATGTCTCCTCAGACAACCAGGTCTGCAGGTTCAGGAAAGAACTTGAACTCACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCTCCCACTCACTCTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAACGAGGGATTGATATTAGTAGACTGTTGCTTTCAAGTTCAGAAGATCAAACGGCCAAATTGGAAGAAAATGGTTGTGATTCGGTTGCTAAACCATCTACGTCACCATCTGGAACCAATGTTCCAAATACCAGTGGTGAGGATGAACCGTCTCATAGTCATAACAGGACTTCATCTACCTCTAGTGCAGTCTCAAATGCTAATCACTCTCGAGGAACTTCAGGGGAAACCAATGAAGCTACACATTTGTCAACCAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCTCGACTACCAACCACAGAGAACCAGAGCGAGAGCATCCACCGAGACTAGCTGACCCAAGATCTCGAGGTAATACGATGTGGCTCCGGCCATCAGAGAGGTTTGCCTCTAGGATAATTACATCATCTGTTAATGAGACAAGGCCGGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAGAGCAGTTCACTTGACACTTTAAGAGGTGCCACAGCTGAATTGCGGTTGCTGGCTAAACATAATATGGATAACCGGATAGTGATTGCTCAATGTGGGGCGATTGAATATTTGGTTGATTTGCTCCTCTCTGCTGACTCGAAGATCCAGGAGAATGCTGTGACAGCACTTCTAAACTTATCCATCAATGATAATAACAAAAGTGCCATAGCTCAGGCTAATGCCATTGAACCTTTGATTCACGTTCTTAAAACTGGGAGCCCAGAAGCGAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCCGGAGCAATAGGGCCCCTGGTTGAATTATTAGGCAATGGAACCCCAAGGGGAAAGAAGGATGCAGCTACAGCTCTGTTTAATTTGTCAATATTCCATGAGAACAAAGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACTATTCCCGAGGGTAGGTCTGCAATTGGCCAGGAAGGTGGAATCCCTGTTCTGGTTGAGGTCGTCGAGTTGGGTTCTGCGAGAGGAAAGGAAAATGCAGCAGCAGCATTGTTGCAGCTCTGCACTACAAGCAATAGGCATTGCAGTATGGTGCTTCAAGAAGGAGCCGTGCCACCATTGGTGGCATTGTCTCAATCTGGCACCGCTAGAGCCAAAGAAAAGGCCCAAGCACTTCTGAGCCATTTCAGAAGCCAGAGACATGGAAATTCAGGAAGAGGGTAA 2574 43.71 MHSFSFILIEYDIDAGAMGVSLLKVLLRHISSFLQLSSSDYINLQPTLKYYHKIEGVLKLLRPILDAVVDSDIASDEELTQAFEDLDHSVDELRVLFENRQPLSSKVYFVLQIEALISKIGKFSLDIFQLLQSSNENLPEELSSTSLEHCVQKIKHIGKEEISFVIKDAIRNQVDGIAPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAENTGEAEDIDQMIALVTRMHERLIMIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDQGLNVCPKTRQTLVHTNLIPNYTVKALIANWCDTNNVKLSDPSKSVNLNQLSPLLVGSFESDTPREPRFPHSPGYQPMSPQTTRSAGSGKNLNSLGGTHRDGSSSLLSHSLSEDSLSNDAGDERGIDISRLLLSSSEDQTAKLEENGCDSVAKPSTSPSGTNVPNTSGEDEPSHSHNRTSSTSSAVSNANHSRGTSGETNEATHLSTNLTGYGSDAAGESKSEPLAAATSTTNHREPEREHPPRLADPRSRGNTMWLRPSERFASRIITSSVNETRPDLSAIEAQVQKVVEELKSSSLDTLRGATAELRLLAKHNMDNRIVIAQCGAIEYLVDLLLSADSKIQENAVTALLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29928940 29934477 - CePI673135_02g013120.1 Cec02g1312 196365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1312 857 CDD RING-Ubox_PUB 254 306 IPR045210 -
Cec02g1312 857 MobiDBLite consensus disorder prediction 431 542 - -
Cec02g1312 857 Pfam Armadillo/beta-catenin-like repeat 644 683 IPR000225 GO:0005515(InterPro)
Cec02g1312 857 Pfam Armadillo/beta-catenin-like repeat 605 642 IPR000225 GO:0005515(InterPro)
Cec02g1312 857 Pfam Armadillo/beta-catenin-like repeat 687 724 IPR000225 GO:0005515(InterPro)
Cec02g1312 857 PANTHER U BOX DOMAIN-CONTAINING 46 850 - -
Cec02g1312 857 SMART arm_5 603 643 IPR000225 GO:0005515(InterPro)
Cec02g1312 857 SMART arm_5 808 848 IPR000225 GO:0005515(InterPro)
Cec02g1312 857 SMART arm_5 644 684 IPR000225 GO:0005515(InterPro)
Cec02g1312 857 SMART arm_5 766 806 IPR000225 GO:0005515(InterPro)
Cec02g1312 857 SMART arm_5 685 725 IPR000225 GO:0005515(InterPro)
Cec02g1312 857 SMART arm_5 726 765 IPR000225 GO:0005515(InterPro)
Cec02g1312 857 SUPERFAMILY ARM repeat 573 846 IPR016024 -
Cec02g1312 857 SMART Ubox_2 256 319 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec02g1312 857 Gene3D - 556 853 IPR011989 -
Cec02g1312 857 MobiDBLite consensus disorder prediction 363 403 - -
Cec02g1312 857 FunFam RING-type E3 ubiquitin transferase 252 327 - -
Cec02g1312 857 MobiDBLite consensus disorder prediction 438 458 - -
Cec02g1312 857 Pfam U-box domain 253 323 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec02g1312 857 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 614 656 IPR000225 GO:0005515(InterPro)
Cec02g1312 857 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 327 IPR013083 -
Cec02g1312 857 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 696 738 IPR000225 GO:0005515(InterPro)
Cec02g1312 857 MobiDBLite consensus disorder prediction 345 410 - -
Cec02g1312 857 ProSiteProfiles U-box domain profile. 252 326 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec02g1312 857 MobiDBLite consensus disorder prediction 521 535 - -
Cec02g1312 857 FunFam RING-type E3 ubiquitin transferase 557 852 - -
Cec02g1312 857 SUPERFAMILY RING/U-box 242 329 - -
Cec02g1312 857 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 737 778 IPR000225 GO:0005515(InterPro)
Cec02g1312 857 MobiDBLite consensus disorder prediction 465 503 - -
Cec02g1312 857 Coils Coil 196 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1312 Cec-Chr2:29928940 Cec04g1418 Cec-Chr4:33786815 4.60E-34 dispersed
Cec09g0759 Cec-Chr9:6938994 Cec02g1312 Cec-Chr2:29928940 2.00E-73 transposed
Cec02g1312 Cec-Chr2:29928940 Cec04g1417 Cec-Chr4:33778253 4.10E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1312 - - - 0.0