Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1338 ATGGACGACATCGACATTCTGAAATCGACACTCTCCCCATCCGACATGTCGTCGGCCACAATGTTCATGAACAATAACACGACCAATTGCCCTCAACTCCCAGTCGTCCCACCGCCGTATTTCTCCGATTTCTCCCCGCCGGGCAGCTCCTTATTCCAAAGCCCAACAATAATCCCGGAGGCTCCAGCACGGCGGGGGCGGAGCGGGAGCGGCGGAGGAATGGCGGCGATGAGAGAGATGATATTCAGAATAGCGGCGATGCAGCCAATAGAAATAGACCCGGAGGCAATAAAGGCCCCGAAGCGGCGGAACGTGAGAATCTCGAAGGATCCGCAGAGCGTGGCGGCGAGGCACCGGCGGGAGAGGATTAGCCAGAAAATTAGGATTCTGCAGCGGTTGGTGCCCGGCGGGACGAAGATGGACACGGCGTCGATGCTTGATGAGGCGGTGCATTATGTGAAGTTCTTGAAGAGGCAAGTCCAGACGTTGGAGCAGGCTGGATTTCATAATAATAATTTTAATTTCGTGAATTCTGCCAATTTAAATTACTCTTCTGCCCTTTTCAAGGCTTGCCAAATAATGCCTGCTTCCTTGCAAATGCATTCATGA 609 52.87 MDDIDILKSTLSPSDMSSATMFMNNNTTNCPQLPVVPPPYFSDFSPPGSSLFQSPTIIPEAPARRGRSGSGGGMAAMREMIFRIAAMQPIEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNNNFNFVNSANLNYSSALFKACQIMPASLQMHS 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30386777 30387385 - CePI673135_02g013380.1 Cec02g1338 196391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1338 202 FunFam BHLH transcription factor 110 174 - -
Cec02g1338 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 111 166 IPR036638 GO:0046983(InterPro)
Cec02g1338 202 Gene3D - 106 173 IPR036638 GO:0046983(InterPro)
Cec02g1338 202 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 107 156 IPR011598 GO:0046983(InterPro)
Cec02g1338 202 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 72 185 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g1338 202 Pfam Helix-loop-helix DNA-binding domain 116 157 IPR011598 GO:0046983(InterPro)
Cec02g1338 202 CDD bHLH_AtIND_like 108 164 - -
Cec02g1338 202 SMART finulus 113 162 IPR011598 GO:0046983(InterPro)
Cec02g1338 202 Coils Coil 146 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1338 Cec-Chr2:30386777 Cec08g1655 Cec-Chr8:27890832 1.40E-37 dispersed
Cec02g1338 Cec-Chr2:30386777 Cec05g2218 Cec-Chr5:33719264 1.00E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29054 PF00010 HLH 7.00E-07 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1338 - - - 0.0