Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1362 ATGGCACAACAAGACTACCAACAAGCGGCGGCGGCAGGTTTCTTCACGCCTTTCTGCAATGGCTATGATAGATCCTCCACAACCCACCAAGACTCTCAACAACACTACCAACACATAGCCCACCAGATCCGTAAGGAGAAGCTCCGCCTCCAAGGCTTCGACCCACAGCCACATCCACCGTCGTTAGTCGGAATTGACGATGACAACGACGACCAATCCGCTGTCCACCATGTCTACGACTCCACCGGAATTTTATCCGAAATGTTCAATTTCCCTCCGCCTCCACCACCACCGCCACCGCAAACCGACTGGTACGGTAACCGGCAAACAATCAACGCGGCCGACTCGGCTGTCGCCATGCAGCTTTTTCTAATGAACCCGAATCCCCGGTCGCCGTCTCCGCCACCGCCACCACCTTCCTCAACACTCCACATGCTTCTTCCAAACCCATCTTCAGGAGGGTCTTTTGGACAATTCACATGGGGGGTGGTTCCAGAGCAAGAAACAGGTGACCATTCTTCATCAAACCCTAACGAAGGCCGTCTTTCGTTGTCATTGTCATCGTCTTTGGAAGCTGCAAAAGCCGAGGAATTGAGAATGGGTGACAGCACCGACGGGTTACTTTATCATCACCACCATCACCCTCAACATGTACATGTCGGATCAATTGGGTCCTCCAATCCACTGGGAGTCGTCAACTTATTGAGAAACTCAAAATATGTCAAAGCTGCAAAAGAATTATTAGAGGAATTTTGTAGCGTTGGAAGAGGTCAGTTTAAGAAAAATAATAATCATGATAACAAATTTAATAATAAATCAAATTTGCCCTCCAACTCCAATTCCCACGGCGGTGGCGGCGACGGTACCGGAGTTTCTTCCTCTTCGACAAAGGATCATCAGCCAGCTTTGTCAGCAGCTGATAGGATTGACCATCAAAGAAGGAAGGTCAAACTGTTATCTATGCTTGATGAGGTGGATCGAAGATACAACCATTACTGCGAGCAGATGCAAATGGTAGTAAATTCATTCGACGAGGTGATGGGGTTTGGAGCGGCGGTGCCATACACATCGTTGGCGCAAAAGGCGATGTCGAGACATTTCAGGTGTCTAAAGGACGTTATATCAGCGCAGTTGAAGCATAGTTGTGAGATGTTGGGAGAGAAAGATGGAGGAGTAAGTGGAAGAGCCTCAGGAATAACAAAGGGTGAGACTCCAAGGCTAAAGCTCTTGGAGCAATGCCTTAGGCAGCAACGAGCTTTCCACCAAATGGGCATTATGGAACAAGAAGCTTGGCGTCCCCAACGCGGTTTACCCGAACGCTCTGTCAACATCTTACGAGCTTGGCTCTTCGAGCATTTCCTTCATCCGTACCCTAGCGATGCTGATAAACATTTGTTGGCTAGGCAGACTGGTTTGTCAAGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAAGCCAAACAAGATGATGATGATGATGATAATACGGATGAAGACACACAAACCAACTCTCAACAAATTACCACTAATAATAATCCTCTTTCACAAACTCCAACGCCGCCTACTTCCTCCGCCGCACCACCACCCCCCTCCTCCTCGACCGCCTCTCCTCCCAAAATACCCGATCACCCTTCACCCTTCTCCGCCGCCGCTACCCACTGCTTTCCGGCTACCCATTATGACTCAGACCTCCACGACTCGTGTCGTCGCCTCACCGTTCTCCCTGCACCTGATCTTCAATTCGGGACCACAACCTCTTCTGCCACGTCTGACATCCCCGGCCCCACCACCCTCATAAGGTTCGGGACCACCGCCGGTGACGTGTCGCTCACACTAGGTTTACGCCATGCCGGAAATATCCCCGATAAAACCTCTTCTTTCTCCCTCAGATCCGAGTTTGGAGGCTGTTAG 1956 50.0 MAQQDYQQAAAAGFFTPFCNGYDRSSTTHQDSQQHYQHIAHQIRKEKLRLQGFDPQPHPPSLVGIDDDNDDQSAVHHVYDSTGILSEMFNFPPPPPPPPPQTDWYGNRQTINAADSAVAMQLFLMNPNPRSPSPPPPPPSSTLHMLLPNPSSGGSFGQFTWGVVPEQETGDHSSSNPNEGRLSLSLSSSLEAAKAEELRMGDSTDGLLYHHHHHPQHVHVGSIGSSNPLGVVNLLRNSKYVKAAKELLEEFCSVGRGQFKKNNNHDNKFNNKSNLPSNSNSHGGGGDGTGVSSSSTKDHQPALSAADRIDHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDEVMGFGAAVPYTSLAQKAMSRHFRCLKDVISAQLKHSCEMLGEKDGGVSGRASGITKGETPRLKLLEQCLRQQRAFHQMGIMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKQDDDDDDNTDEDTQTNSQQITTNNNPLSQTPTPPTSSAAPPPPSSSTASPPKIPDHPSPFSAAATHCFPATHYDSDLHDSCRRLTVLPAPDLQFGTTTSSATSDIPGPTTLIRFGTTAGDVSLTLGLRHAGNIPDKTSSFSLRSEFGGC 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30712336 30718194 - CePI673135_02g013620.1 Cec02g1362 196415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1362 651 SMART prehox3 229 376 IPR006563 -
Cec02g1362 651 MobiDBLite consensus disorder prediction 259 309 - -
Cec02g1362 651 MobiDBLite consensus disorder prediction 535 559 - -
Cec02g1362 651 Gene3D - 434 496 - -
Cec02g1362 651 MobiDBLite consensus disorder prediction 125 149 - -
Cec02g1362 651 MobiDBLite consensus disorder prediction 128 144 - -
Cec02g1362 651 ProSiteProfiles 'Homeobox' domain profile. 428 491 IPR001356 GO:0003677(InterPro)
Cec02g1362 651 MobiDBLite consensus disorder prediction 515 534 - -
Cec02g1362 651 CDD homeodomain 431 492 IPR001356 GO:0003677(InterPro)
Cec02g1362 651 MobiDBLite consensus disorder prediction 499 562 - -
Cec02g1362 651 MobiDBLite consensus disorder prediction 268 301 - -
Cec02g1362 651 MobiDBLite consensus disorder prediction 500 514 - -
Cec02g1362 651 Pfam Associated with HOX 235 375 IPR006563 -
Cec02g1362 651 Pfam Homeobox KN domain 448 487 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec02g1362 651 SUPERFAMILY Homeodomain-like 432 498 IPR009057 -
Cec02g1362 651 SMART HOX_1 431 495 IPR001356 GO:0003677(InterPro)
Cec02g1362 651 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 169 519 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec02g1362 651 FunFam BEL1-like homeodomain protein 4 434 496 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0238 Cec-Chr1:2349830 Cec02g1362 Cec-Chr2:30712336 2.00E-76 dispersed
Cec02g1362 Cec-Chr2:30712336 Cec04g1314 Cec-Chr4:32760880 4.40E-130 dispersed
Cec02g1362 Cec-Chr2:30712336 Cec10g1845 Cec-Chr10:33299423 1.10E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29057 PF07526 POX 4.30E-51 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1362 - - - 0.0