Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1447 ATGGCGACTTCGACACTGGGCGGCACCATAGGCTTCTCCCAGCCCTCGTCTTCCTCGCATATCTCAGTTTATTGCACTCCCTTTTCAACCAGCAGATTCAGTTTCTCGAGGACCATTTTTTCTCCTCTTAAGCTTGAAAAACCACCATCTGGAAGAAGAGCCAGAGCTGTAATTGCTGTGAAAATGGCTGCTGAGGCTTTTCAGGAAGTTTTTCCTCCAGCCCTCACTTCAGCTTCAGAACCACCTCCTCTCTTTGATGGAACAACGAGGCTTTACATATCTTATACATGCCCTTATGCGCAGCGTGTGTGGATTACTCGGAATTGTAAGGGTTTGCAGAATAAGATACAATTGGTTCCAATAAATCTACAGGATAGGCCATCTTGGTACATGGAAAAAGTTTACCCACCTAACAAGGTGCCAGCTCTTGAACATAATAATGAGGTCAAAGGAGAGAGTCTTGACTTAATTAAATATATTGACAGCAATTTTGAAGGGCCTTCATTATTTCCTGATGATCCAGGAAAGCGAGAGTTTGCTGAAGAGCTGATAGACTACGTGAACTCTTTCACGAAATCTGTGGTTTCTTCATTTAAAGGAGATGGAAATGAAGCTGATGTGGCATTTGACTACATCGAATCTGCTCTTTCAAAATATGGAGATGGCCCGTTTTTTCTAGGCCAGTTTAGTCTGGTGGATATAGCTTATGCTCCGTTTATTGAAAGGTTTCAGCCGTTCTTATTAGAAGTAAAAACATATGACATCACTGCTGGCAGGCCAAAACTAGCAGCTTGGATTGAGGAGATGAACAAGATCGAAGGGTACCAGAAAACAAGGGGCGATCCACGGGAACATGTTGATAGCTATAAGAAGCGATTCTTGAGCCATTTGTGA 894 43.06 MATSTLGGTIGFSQPSSSSHISVYCTPFSTSRFSFSRTIFSPLKLEKPPSGRRARAVIAVKMAAEAFQEVFPPALTSASEPPPLFDGTTRLYISYTCPYAQRVWITRNCKGLQNKIQLVPINLQDRPSWYMEKVYPPNKVPALEHNNEVKGESLDLIKYIDSNFEGPSLFPDDPGKREFAEELIDYVNSFTKSVVSSFKGDGNEADVAFDYIESALSKYGDGPFFLGQFSLVDIAYAPFIERFQPFLLEVKTYDITAGRPKLAAWIEEMNKIEGYQKTRGDPREHVDSYKKRFLSHL 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31808412 31813295 + CePI673135_02g014470.1 Cec02g1447 196500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1447 297 PANTHER GLUTATHIONE S-TRANSFERASE L1 62 296 IPR044629 GO:0004364(PANTHER)|GO:0004364(InterPro)|GO:0010731(PANTHER)
Cec02g1447 297 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 87 168 IPR004045 -
Cec02g1447 297 SFLD Main (cytGST) 90 271 - -
Cec02g1447 297 CDD GST_C_Lambda 173 290 - -
Cec02g1447 297 Gene3D - 166 297 - -
Cec02g1447 297 Gene3D Glutaredoxin 62 165 - -
Cec02g1447 297 FunFam Glutathione S-transferase L2, chloroplastic 62 165 - -
Cec02g1447 297 Pfam Glutathione S-transferase, C-terminal domain 208 267 - -
Cec02g1447 297 FunFam Lambda class glutathione S-transferase 166 296 - -
Cec02g1447 297 SFLD Glutathione Transferase (cytosolic) 90 271 IPR040079 -
Cec02g1447 297 Pfam Glutathione S-transferase, N-terminal domain 91 167 IPR004045 -
Cec02g1447 297 SUPERFAMILY GST C-terminal domain-like 164 293 IPR036282 -
Cec02g1447 297 SUPERFAMILY Thioredoxin-like 78 169 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1447 K00799 - - csv:101220995 526.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1447 Cec-Chr2:31808412 Cec10g2074 Cec-Chr10:35464162 6.60E-89 dispersed
Cec10g2073 Cec-Chr10:35448244 Cec02g1447 Cec-Chr2:31808412 1.40E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g350 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01351 Cam02g1428 Cec02g1447 Cco02g1483 Clacu02g1410 Cmu02g1366 Cre02g1689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec09g0586 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 1.4e-64 243.0
Cec09g0584 . 1 210 Glutathione S-transferase Gene Family AT4G02520 59.6 2.4e-64 242.3
Cec09g0585 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 2.5e-58 222.2
Cec09g0584 . 1 211 Glutathione S-transferase Gene Family AT2G02930 60.7 1.2e-65 246.5
Cec09g0586 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.7 4.0e-64 241.5
Cec09g0585 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 2.3e-59 225.7
Cec09g0586 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.2 2.5e-60 229.2
Cec09g0584 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 9.4e-60 227.3
Cec09g0585 . 5 206 Glutathione S-transferase Gene Family AT1G02950 51.7 7.2e-52 201.1
Cec09g0584 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.8 6.7e-64 240.7
Cec09g0586 . 1 210 Glutathione S-transferase Gene Family AT1G02930 54.8 4.1e-61 231.5
Cec09g0585 . 1 210 Glutathione S-transferase Gene Family AT1G02930 52.9 2.3e-56 215.7
Cec09g0584 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.2 2.7e-65 245.4
Cec09g0586 . 1 210 Glutathione S-transferase Gene Family AT1G02920 55.2 3.7e-62 235.0
Cec09g0585 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 2.5e-58 222.2
Cec09g0586 . 1 215 Glutathione S-transferase Gene Family AT2G47730 57.9 5.7e-68 254.6
Cec09g0584 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.2 2.0e-65 246.1
Cec09g0585 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.8 3.9e-61 231.9
Cec09g0587 . 1 214 Glutathione S-transferase Gene Family AT3G62760 57.9 9.8e-74 273.5
Cec09g0584 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 1.7e-48 189.9
Cec04g0897 . 3 214 Glutathione S-transferase Gene Family AT3G09270 53.8 3.2e-64 241.9
Cec04g0888 . 3 213 Glutathione S-transferase Gene Family AT3G09270 52.8 4.7e-63 238.0
Cec04g0899 . 3 212 Glutathione S-transferase Gene Family AT3G09270 52.8 8.0e-55 210.7
Cec05g2664 . 1 130 Glutathione S-transferase Gene Family AT1G74590 53.8 9.2e-38 154.1
Cec07g1154 . 1 214 Glutathione S-transferase Gene Family AT1G78380 71.5 1.8e-88 322.4
Cec07g1156 . 1 216 Glutathione S-transferase Gene Family AT1G78380 69.4 1.0e-86 316.6
Cec07g1155 . 1 217 Glutathione S-transferase Gene Family AT1G78380 66.8 2.9e-81 298.5
Cec01g0865 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.4 8.1e-68 253.8
Cec07g1154 . 7 214 Glutathione S-transferase Gene Family AT1G78370 65.4 5.3e-80 294.3
Cec07g1156 . 7 214 Glutathione S-transferase Gene Family AT1G78370 62.5 6.8e-75 277.3
Cec07g1155 . 7 216 Glutathione S-transferase Gene Family AT1G78370 57.6 7.7e-71 263.8
Cec01g0865 . 7 220 Glutathione S-transferase Gene Family AT1G78370 54.7 5.4e-64 241.1
Cec07g1154 . 1 214 Glutathione S-transferase Gene Family AT1G78340 65.0 8.3e-81 297.0
Cec07g1156 . 1 216 Glutathione S-transferase Gene Family AT1G78340 63.4 7.7e-79 290.4
Cec07g1155 . 1 217 Glutathione S-transferase Gene Family AT1G78340 59.4 9.8e-74 273.5
Cec01g0865 . 4 218 Glutathione S-transferase Gene Family AT1G78340 54.0 3.5e-63 238.4
Cec07g1154 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.7 3.8e-61 231.5
Cec07g1154 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.6 2.4e-91 332.0
Cec07g1156 . 1 219 Glutathione S-transferase Gene Family AT1G17180 63.0 2.0e-82 302.4
Cec07g1155 . 1 220 Glutathione S-transferase Gene Family AT1G17180 61.8 3.8e-81 298.1
Cec01g0865 . 4 224 Glutathione S-transferase Gene Family AT1G17180 55.7 1.6e-68 256.1
Cec07g1154 . 3 217 Glutathione S-transferase Gene Family AT1G17190 59.1 2.4e-75 278.9
Cec07g1156 . 2 217 Glutathione S-transferase Gene Family AT1G17190 56.0 9.3e-72 266.9
Cec07g1155 . 2 218 Glutathione S-transferase Gene Family AT1G17190 54.4 1.9e-69 259.2
Cec07g1154 . 3 214 Glutathione S-transferase Gene Family AT3G43800 59.3 5.1e-73 271.2
Cec07g1156 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.5 2.6e-69 258.8
Cec07g1155 . 3 212 Glutathione S-transferase Gene Family AT3G43800 52.6 1.7e-65 246.1
Cec07g1154 . 4 218 Glutathione S-transferase Gene Family AT1G53680 58.5 8.0e-71 263.8
Cec07g1156 . 2 219 Glutathione S-transferase Gene Family AT1G53680 56.4 8.3e-68 253.8
Cec01g0865 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 9.4e-64 240.4
Cec02g0038 . 55 221 Glutathione S-transferase Gene Family AT2G02390 68.3 9.9e-62 233.4
Cec05g0261 . 61 217 Glutathione S-transferase Gene Family AT2G02390 51.6 7.1e-44 174.1
Cec02g0038 . 14 224 Glutathione S-transferase Gene Family AT2G02380 64.9 2.8e-76 282.0
Cec05g0261 . 18 217 Glutathione S-transferase Gene Family AT2G02380 54.0 3.8e-57 218.4
Cec07g0880 . 88 327 Glutathione S-transferase Gene Family AT5G41210 67.5 1.1e-92 336.7
Cec07g0880 . 88 332 Glutathione S-transferase Gene Family AT5G41240 64.7 2.0e-89 327.0
Cec10g2074 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.9 2.5e-83 305.4
Cec10g2075 . 15 228 Glutathione S-transferase Gene Family AT5G02780 66.7 4.8e-82 301.2
Cec02g1447 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.4e-80 295.0
Cec10g2073 . 5 232 Glutathione S-transferase Gene Family AT5G02780 62.8 1.9e-75 279.3
Cec02g1447 . 34 292 Glutathione S-transferase Gene Family AT3G55040 61.5 1.1e-85 313.5
Cec10g2074 . 3 230 Glutathione S-transferase Gene Family AT3G55040 59.0 2.6e-77 285.8
Cec10g2075 . 6 226 Glutathione S-transferase Gene Family AT3G55040 60.1 7.4e-77 284.3
Cec10g2073 . 6 230 Glutathione S-transferase Gene Family AT3G55040 55.5 1.8e-70 263.1
Cec10g2074 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 1.8e-89 325.9
Cec10g2075 . 15 228 Glutathione S-transferase Gene Family AT5G02790 69.2 3.7e-87 318.2
Cec10g2073 . 5 232 Glutathione S-transferase Gene Family AT5G02790 65.2 3.3e-83 305.1
Cec02g1447 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 3.6e-82 301.6
Cec02g1423 . 1 212 Glutathione S-transferase Gene Family AT1G19570 66.2 4.7e-81 297.7
Cec05g1315 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.9 5.3e-72 267.7
Cec11g0974 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.4 1.5e-71 266.2
Cec02g1423 . 1 211 Glutathione S-transferase Gene Family AT1G75270 70.3 1.7e-86 315.8
Cec05g1315 . 65 272 Glutathione S-transferase Gene Family AT1G75270 61.7 8.7e-75 276.9
Cec11g0974 . 65 272 Glutathione S-transferase Gene Family AT1G75270 61.7 4.3e-74 274.6
Cec05g1315 . 54 272 Glutathione S-transferase Gene Family AT5G16710 77.2 1.3e-101 366.3
Cec11g0974 . 9 272 Glutathione S-transferase Gene Family AT5G16710 67.7 1.1e-100 363.2
Cec02g1423 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.6 1.7e-72 269.6
Cec11g1651 . 1 267 Glutathione S-transferase Gene Family AT1G77290 70.0 3.6e-110 394.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000664 2 7 0 1 1 2 3 2 3 3 1 3 2 4 4 3 3 4 2 2 4 3 3 4 5 3 2 8 6 4 94