Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1461 ATGACGAGCCTCCGATTCTTGTTCAGCAATGGCGTCGTATTGCAAGGCTCCGAAGCTCCTCCGGTCGCCACCTTCCTCGAAACTCATCCTGGCGCTTATACAACCACTCGGTCACATAATAATGCATCGAGCATTCTGTTTTGGGATAGGCACATGAAAAGGCTGAGTCAGTCGGTGAAAATTCTGTCGAATTCAAGTCCACTACTCTTGTCAGAATCTAACAGAACAATCAATAAACTGGTAAAACCGTCGTGGATAGATTCTGTTCCCTGGGAACCAGCTATCCGGACGCTTGTTGATGATTCAATGAGAAAAGTGTTGCCAACAGCATTGAATGAGAGAATTGGGGGAGAAGAATTGACAATTACAGTGCTCGTAAGTGTGAATTTGGAAAATTTGGGTGAAAATGACGGTGTTGTGGATGTAGAAAGACTTAAAGAGGCCCTTGATGTGCACGTGCATGTTGGTAGTTATGTTCCTCGTGAATTTGGTGTCCCGGAAAATGGTGCGAATCTGGCTGTGGTGGGTCGAGGGAGGGATGTTGCTGCGGCAAAGTACTCAGATTGGGTTAGGCGTAGGAAGTCTCTGGAAAAATTGAGGCCTCCATCTGTGACCGAGCTTTTGTTGTCAAATGATGGTGATCATATACTTGAAGGCTGCGTGACAAACTTTTTTGTTGTTTGCCGCAAGAATAATAATGAAGCCAAAGAGACAAGCGTTCTTGATTCCGCAAGAACATATTCCTTTGAACTGCAGACAGCTCCCATTAATGATGGTGTTCTGACTGGAGTTATTCGTCAATTAGTCATTGAAGCTTGTTCAAGCAACGGCATCCCATTTCGAGAAGTTGCACCTACTTGGTCAAGTAATGAAATATGGGAAGAAGCATTTGTTACAAGTAGCTTGAGAATCGTGGAGCATGTGAATACTATTTGCATCCCTAGCATATGGGACTTGCTCGACTCGAAAACGTGGAGTGATATATCATGGAACAAGAAGTCGTTTAAGGATGCTCCTGGAATGGTCTCAAGCACAATCCAGAAAGAGATAATGGAGAAAGCTGTTGCAGAAGCATTCCCGATTGCGCGCCAAATACAAAAATTTCTCCTCTTTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCAGGATCTCCCTCATATGGCGGAGCCTCCCACCAGTCCGGCCGGCGGCAGCCACGAAAGCGGCGGTGAGCAGAGCCCTAACACAGGTGGCGTTCGTGAACAGGACCGATTTCTTCCGATCGCTAATATTAGTCGGATCATGAAGAAAGCCTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGCGTCTCTGAATTCATTAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGTCAGAAGGAGAAGAGGAAGACTATTAATGGAGATGACTTGCTTTGGGCAATGGCGACGTTGGGATTTGAGGAATATATTGATCCGCTTAAGTCGTACCTTACTAGATACAGAGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGACGAATCTGCTAAAAGAGATCCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGGGCATTGTGGACTCCGCCATCTTCTTAACAAGCATCTTGCTCGGCTCCCTCATACCCAACCCAACAACTCTCATAGCAAAGGAAAACAAGCCAACCAATCGAAGCAGCATTTTGTGGAAGATCTTCCCATCTGTCAATCCACTTTGGTCAGCCAATTGGTTGGGACAACGCATTCCCACAGACCCACTTGGTGTTGGCTGTTTGATGTCTCTTCAGTCCTCACCATTCGAAAATTGTTCGGAACCCTCCTCCTTTCGATTTCCCTCTCTCGGAACCGCCCCTTCCTCTGCAATCGACAGCCAACAAGGACGACGAAAATTGGACATGATGCAACTACAAATGATGGGACGAAAAAAAGATGGACGTCGACAATGCAAGTGCAAGTTGCAGGCGGCTGGCGACAGGAGATGGACGTTGGATGACGACGCGAACAGATCCCACAGGGAAAATTGA 2064 46.41 MTSLRFLFSNGVVLQGSEAPPVATFLETHPGAYTTTRSHNNASSILFWDRHMKRLSQSVKILSNSSPLLLSESNRTINKLVKPSWIDSVPWEPAIRTLVDDSMRKVLPTALNERIGGEELTITVLVSVNLENLGENDGVVDVERLKEALDVHVHVGSYVPREFGVPENGANLAVVGRGRDVAAAKYSDWVRRRKSLEKLRPPSVTELLLSNDGDHILEGCVTNFFVVCRKNNNEAKETSVLDSARTYSFELQTAPINDGVLTGVIRQLVIEACSSNGIPFREVAPTWSSNEIWEEAFVTSSLRIVEHVNTICIPSIWDLLDSKTWSDISWNKKSFKDAPGMVSSTIQKEIMEKAVAEAFPIARQIQKFLLFPSSSSSSSSSSSSSSFQDLPHMAEPPTSPAGGSHESGGEQSPNTGGVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDPVGALPGQNSQGIVDSAIFLTSILLGSLIPNPTTLIAKENKPTNRSSILWKIFPSVNPLWSANWLGQRIPTDPLGVGCLMSLQSSPFENCSEPSSFRFPSLGTAPSSAIDSQQGRRKLDMMQLQMMGRKKDGRRQCKCKLQAAGDRRWTLDDDANRSHREN 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32002614 32018847 + CePI673135_02g014610.1 Cec02g1461 196514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1461 687 PRINTS CCAAT-binding transcription factor subunit A signature 471 489 - -
Cec02g1461 687 PRINTS CCAAT-binding transcription factor subunit A signature 490 508 - -
Cec02g1461 687 PRINTS CCAAT-binding transcription factor subunit A signature 452 470 - -
Cec02g1461 687 Gene3D - 30 89 IPR043131 -
Cec02g1461 687 Gene3D Histone, subunit A 414 536 IPR009072 GO:0046982(InterPro)
Cec02g1461 687 MobiDBLite consensus disorder prediction 512 534 - -
Cec02g1461 687 MobiDBLite consensus disorder prediction 404 418 - -
Cec02g1461 687 Pfam Amino-transferase class IV 31 305 IPR001544 GO:0003824(InterPro)
Cec02g1461 687 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 424 488 IPR003958 -
Cec02g1461 687 MobiDBLite consensus disorder prediction 374 392 - -
Cec02g1461 687 FunFam Nuclear factor Y, subunit B1 414 513 - -
Cec02g1461 687 ProSitePatterns NF-YB/HAP3 subunit signature. 455 471 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec02g1461 687 Gene3D - 171 367 IPR043132 -
Cec02g1461 687 MobiDBLite consensus disorder prediction 374 420 - -
Cec02g1461 687 PANTHER D-AMINOACID AMINOTRANSFERASE-LIKE PLP-DEPENDENT ENZYMES SUPERFAMILY PROTEIN 1 363 - -
Cec02g1461 687 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 20 311 IPR036038 GO:0003824(InterPro)
Cec02g1461 687 SUPERFAMILY Histone-fold 421 522 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1461 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0951 Cec-Chr2:13010460 Cec02g1461 Cec-Chr2:32002614 3.20E-42 transposed
Cec03g1762 Cec-Chr3:35920762 Cec02g1461 Cec-Chr2:32002614 4.10E-25 transposed
Cec07g1022 Cec-Chr7:24883369 Cec02g1461 Cec-Chr2:32002614 3.30E-40 transposed
Cec09g0592 Cec-Chr9:5127052 Cec02g1461 Cec-Chr2:32002614 5.00E-35 transposed
Cec10g0423 Cec-Chr10:5109684 Cec02g1461 Cec-Chr2:32002614 2.70E-42 transposed
Cec10g0441 Cec-Chr10:5277628 Cec02g1461 Cec-Chr2:32002614 2.00E-31 transposed
Cec10g2065 Cec-Chr10:35366968 Cec02g1461 Cec-Chr2:32002614 2.70E-44 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g0441 . 12 148 CCAAT-HAP3 Transcription Factor Family AT5G47670 69.6 2.0e-48 189.5
Cec02g0951 . 6 131 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.3 1.9e-38 156.4
Cec10g0423 . 6 127 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.6 6.0e-37 151.4
Cec10g0441 . 8 170 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.4e-51 198.4
Cec07g1022 . 9 137 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.1e-37 152.9
Cec02g0951 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.4e-56 216.1
Cec10g0423 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.4 3.9e-51 198.0
Cec07g1022 . 28 134 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 5.8e-47 184.1
Cec02g1461 . 406 524 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.9 1.7e-43 172.6
Cec09g0592 . 44 139 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 1.9e-37 152.5
Cec02g1461 . 393 509 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.5 5.9e-49 190.7
Cec02g0951 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.4e-42 169.5
Cec10g0423 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 9.1e-42 166.8
Cec07g1022 . 15 121 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.5e-41 164.9
Cec09g0592 . 32 135 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.8 1.2e-38 156.4
Cec09g0592 . 42 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.0e-43 173.3
Cec10g0423 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.5e-39 159.5
Cec02g0951 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.8e-39 157.5
Cec07g1022 . 31 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 4.9e-38 154.5
Cec02g1461 . 399 537 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.8 6.8e-54 207.2
Cec10g2065 . 37 200 CCAAT-HAP3 Transcription Factor Family AT2G37060 63.3 7.3e-48 187.2
Cec02g0951 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.3e-44 176.4
Cec07g1022 . 30 135 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 3.9e-41 164.9
Cec10g0423 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 6.6e-41 164.1
Cec09g0592 . 43 145 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 7.6e-37 150.6
Cec07g1022 . 18 132 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.1e-44 176.0
Cec02g0951 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.6e-44 175.3
Cec10g0423 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.2e-41 166.0
Cec02g1461 . 419 513 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 2.7e-39 159.1
Cec09g0592 . 20 144 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.2 2.7e-39 159.1
Cec02g0951 . 1 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.1e-52 201.4
Cec10g0423 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.5 5.0e-50 194.5
Cec07g1022 . 26 131 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 8.3e-45 177.2
Cec02g1461 . 419 529 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.9 1.7e-42 169.5
Cec09g0592 . 44 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.2e-38 156.8
Cec02g1461 . 404 526 CCAAT-HAP3 Transcription Factor Family AT3G53340 82.4 7.0e-54 207.2
Cec10g2065 . 37 200 CCAAT-HAP3 Transcription Factor Family AT3G53340 60.9 1.2e-45 179.9
Cec02g0951 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.7e-45 178.7
Cec10g0423 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.4e-41 166.4
Cec07g1022 . 19 123 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.8e-41 164.1
Cec09g0592 . 43 145 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.6e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006362 1 6 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29068 PF01063 Aminotran_4 1.30E-14 No_clan Cec TF