Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1490 ATGTCAAATTCCGATCATACCACCAACGCCAATGGCGTCTCCAATGCCGCCGCCATCGAAACCCACAAGAATCAGCCCTCTTCTAACGGAGCCCTCGTCGTCAAAAAACCCCCTTCTAAGGACCGTCACAGTAAAGTCGACGGCCGTGGCCGCCGCATCCGTATGCCCATCATCTGCGCCGCCAGAGTATTTCAGCTGACTCGAGAGCTTGGTCATAAATCCGACGGCCAAACCATCGAGTGGCTCCTTCGCCAGGCTGAGCCTTCCATTATTGCCGCTACTGGTACTGGTACCACCCCTGCTAATTACTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACCACTTCTACTCTCTCCCTCTCTCGCCCTCAAGCTCTCTCCGGTCCCACGCCGTTCTTTCTCGGCAAGCGCGTTAGGTCCGACGATGACGGCAAAGACGATGGGTTAGGAGTGGGTCAAGCGGTTGGGTCCATAGTGGGTCCGACGGGGCCAGGTGGTTACTGGGCGATTCCTGCAAGACCTGATTACGGGCAGGTTTGGAGTTTTGCCGCCGCCGCTCCGTCGGAGATGGTGGTTCAACCAGGGGGGATTTCTCAGCAAGCGTCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAAGCATCGGCGGCGAGAGTGGGAAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGCGGAGGTTCTGGACGGCGGGAAGATGACCCTCGCTAA 774 56.59 MSNSDHTTNANGVSNAAAIETHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANYSSVSLSVRGNGGSASLSSPSSTTSTLSLSRPQALSGPTPFFLGKRVRSDDDGKDDGLGVGQAVGSIVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGSGRREDDPR 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32438782 32439555 + CePI673135_02g014900.1 Cec02g1490 196543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1490 257 ProSiteProfiles TCP domain profile. 39 93 IPR017887 -
Cec02g1490 257 MobiDBLite consensus disorder prediction 112 137 - -
Cec02g1490 257 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 150 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
Cec02g1490 257 Pfam TCP family transcription factor 39 121 IPR017887 -
Cec02g1490 257 MobiDBLite consensus disorder prediction 20 51 - -
Cec02g1490 257 MobiDBLite consensus disorder prediction 36 51 - -
Cec02g1490 257 MobiDBLite consensus disorder prediction 112 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1490 K16221 - - csv:101206050 416.001
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0828 Cec-Chr1:9272961 Cec02g1490 Cec-Chr2:32438782 4.80E-75 dispersed
Cec02g1490 Cec-Chr2:32438782 Cec11g1393 Cec-Chr11:28166933 8.60E-29 dispersed
Cec02g1490 Cec-Chr2:32438782 Cec06g1822 Cec-Chr6:31656827 1.10E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec01g0828 . 48 262 TCP Transcription Factor Family AT5G23280 63.1 6.0e-67 251.1
Cec02g1490 . 37 257 TCP Transcription Factor Family AT5G23280 59.4 1.2e-59 226.9
Cec06g0019 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 3.8e-67 252.3
Cec05g2670 . 66 160 TCP Transcription Factor Family AT3G47620 89.7 8.4e-41 165.2
Cec01g1783 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cec11g1393 . 149 231 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cec11g1393 . 149 241 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Cec05g1534 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.0e-60 229.2
Cec06g0201 . 26 257 TCP Transcription Factor Family AT3G27010 51.0 6.2e-53 204.9
Cec02g1490 . 9 255 TCP Transcription Factor Family AT5G08330 56.3 1.3e-63 240.0
Cec01g0828 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.5e-63 237.3
Cec11g1393 . 148 389 TCP Transcription Factor Family AT1G35560 50.4 1.6e-43 173.7
Cec07g1766 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29070 PF03634 TCP 6.10E-33 No_clan Cec TF