Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1575 ATGGATGAGTTTTACAGGCTTAGCAACTCTGTTATAGCCTCATATTCTAATGGTGTTGTGGGAGGTGAAGCCATTGCAAGCACCAGCTGTGGAGGTATTCATGAAGCTTTAATGGTGGATAATGATATGCTTCAGCTTGAAGCTGAGGCCACCACTGGTTTGAACATGTCTGACATGATCAAAACTCAAATTGTCAACCATCCCCTTTATCCCAAGCTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGCCGTGAAAATCACCCACCTAGGTCTTCTATTGAGTTGGGAGCTGATCCCCAACTGGACAACTTCATGGAGTCATACTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAACCATTTGATGAAGCAACAATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACTGTGACGTCGGATTCTCGCTCGGCCATGAATGACGAAGTAGCCGGGACTCCGGAGGAAGAACAGAGCAGCTATGGGGAGGTGGAAATGCCGGGAAATCACGAGTCGTTCTGCACGCAAAAAACGAACCAAGACCTCAAAGAAATGCTGCTGAAGAAATACAGTGGCTATCTCAGCAGTTTGAAAAAGGAATTCTTGAAGAAAAGAAAGAAGGAGAAGCTGCCAAAAGATGCAAGAATGGCTCTATTTGACTGGTGGAATACTCATTACAAATGGCCTTATCCTACAGAAGAGGAAAAATCGAAACTATCTGTTGTTACTGGTCTAGACCAAAAGCAAATCAATAACTGGTTCATAAACCAGAGAAAGCGACATTGGAAGCCGCCTGAAGATATGCGATTCGTGCTCATGGACGGGGCGGGGGTCGGGGCCGGGGCTGGAGCCGGGGAATGCATTAAAGGATCAAATTTTTATGACAATGGAGAAACTGGAGGCCATGTAATTTGA 984 44.61 MDEFYRLSNSVIASYSNGVVGGEAIASTSCGGIHEALMVDNDMLQLEAEATTGLNMSDMIKTQIVNHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRENHPPRSSIELGADPQLDNFMESYCEVLHQYKNELSKPFDEATMFLTNIELELSNLCKGSFTVTSDSRSAMNDEVAGTPEEEQSSYGEVEMPGNHESFCTQKTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALFDWWNTHYKWPYPTEEEKSKLSVVTGLDQKQINNWFINQRKRHWKPPEDMRFVLMDGAGVGAGAGAGECIKGSNFYDNGETGGHVI 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33345491 33348653 + CePI673135_02g015750.1 Cec02g1575 196628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1575 327 SMART KNOX1_2 58 102 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec02g1575 327 SMART HOX_1 226 291 IPR001356 GO:0003677(InterPro)
Cec02g1575 327 MobiDBLite consensus disorder prediction 166 196 - -
Cec02g1575 327 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec02g1575 327 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677(InterPro)
Cec02g1575 327 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec02g1575 327 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec02g1575 327 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677(InterPro)
Cec02g1575 327 Pfam ELK domain 204 225 IPR005539 GO:0003677(InterPro)
Cec02g1575 327 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec02g1575 327 CDD homeodomain 236 287 IPR001356 GO:0003677(InterPro)
Cec02g1575 327 SMART ELK_2 204 225 IPR005539 GO:0003677(InterPro)
Cec02g1575 327 SUPERFAMILY Homeodomain-like 226 296 IPR009057 -
Cec02g1575 327 Gene3D - 222 293 - -
Cec02g1575 327 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 294 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec02g1575 327 SMART KNOX2_2 105 156 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1575 Cec-Chr2:33345491 Cec04g1874 Cec-Chr4:37321715 3.60E-64 dispersed
Cec02g1575 Cec-Chr2:33345491 Cec05g2778 Cec-Chr5:38185860 3.00E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29074 PF03791 KNOX2 3.80E-21 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1575 - - - 0.0