Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1578 ATGGAATTTGAAGAAGCCTCTCTCTTGCAAAAAGTCTGTGCTCTTTACAACCAAATCTCAAGCCTCGCTAGCCTCGAGCCTTCAAAAAATGTCGACACTCTTTTCACTCAACTCGTCCTCACGTGCTCTCCACCTGCCCCTGGCCTTGATATTGCTTCTTTGTCTCAGCCACTTCAAGCCATGAGGGCTCATCTCATTCGCCTTTGTGCTAAAGCTGAAGCTCTTCTTGAACTTCATTTCTCTTCCATTTTGGCTTCCTCTTTTGATAATCCCATTTCTAACTTGTCCATCTTCCCTTACTACTCTAATTACTTGAAGCTTTCCCTTCTTGAGTTTGATATTCTTCGATCTCATTATCGTCGTGTCCCCGCTACCGTCGCGTTCCTTGGCTCTGGACCCCTCCCGCTCTCCTCCATTGTCATGGCGTCTATCCATCTTAAGGGAACTATTTTCCACAACTTTGACATTGATCCAGCTGCAAACACCATTGCTAGTCAATTGGTTTGCTCTGACCCAGACTTATCACAAAGAATGATATTCCACACAACAGATGTAATGGAAGTGACAAAGGGATTAAAAGATTATGAAGTAGTTTTCTTAGCAGCATTGGTAGGATTAGAAGAGGAAGAAAAAGGAAGAGTTCTAAGGCATTTGGGGAAACATATGGCAGCTGGTGCTTATTTGATGCTAAGAAGTGCACATGGAGCTAGAGCATTTTTATATCCTGTTGTTGATATTTGTAACGTTGAAGCTTCTGGATTTGAGATTTTATCTGTGTTCCATCCCACTGATGAAGTTATCAACTCTGTTGTTATTGCAAGGAAGAAACTAGTGTTTGATCGAAACTCGATCGAGGATGAGGATGACGACGAGGACGACGAGAAGCGAGGTATATTAGTTAATACCTCATCTATTGTGTTGCCTGAGAAATGCTCTGGGTTTAATGGCTTTAGTCCCATGATTGAAGAGCAACTTTCTTGA 981 42.41 MEFEEASLLQKVCALYNQISSLASLEPSKNVDTLFTQLVLTCSPPAPGLDIASLSQPLQAMRAHLIRLCAKAEALLELHFSSILASSFDNPISNLSIFPYYSNYLKLSLLEFDILRSHYRRVPATVAFLGSGPLPLSSIVMASIHLKGTIFHNFDIDPAANTIASQLVCSDPDLSQRMIFHTTDVMEVTKGLKDYEVVFLAALVGLEEEEKGRVLRHLGKHMAAGAYLMLRSAHGARAFLYPVVDICNVEASGFEILSVFHPTDEVINSVVIARKKLVFDRNSIEDEDDDEDDEKRGILVNTSSIVLPEKCSGFNGFSPMIEEQLS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33364221 33365896 - CePI673135_02g015780.1 Cec02g1578 196631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1578 326 Gene3D Vaccinia Virus protein VP39 9 276 IPR029063 -
Cec02g1578 326 Pfam Nicotianamine synthase protein 5 277 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cec02g1578 326 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 280 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cec02g1578 326 PANTHER NICOTIANAMINE SYNTHASE 3 4 283 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1578 K05953 - - csv:101203651 545.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1578 Cec-Chr2:33364221 Cec06g1523 Cec-Chr6:28737520 4.50E-67 dispersed
Cec02g1578 Cec-Chr2:33364221 Cec02g1579 Cec-Chr2:33378933 4.50E-83 tandem
Cec02g1578 Cec-Chr2:33364221 Cec03g1831 Cec-Chr3:36597371 1.40E-97 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec02g1578 . 1 275 Nicotianamine Synthase Gene Family AT1G09240 60.5 9.6e-94 340.5
Cec03g1831 . 1 273 Nicotianamine Synthase Gene Family AT1G09240 59.3 1.4e-92 336.7
Cec02g1579 . 1 276 Nicotianamine Synthase Gene Family AT1G09240 58.5 1.7e-87 319.7
Cec06g1523 . 16 284 Nicotianamine Synthase Gene Family AT1G09240 53.3 3.2e-73 272.3
Cec03g1831 . 3 273 Nicotianamine Synthase Gene Family AT1G56430 61.5 2.2e-98 355.9
Cec02g1578 . 4 326 Nicotianamine Synthase Gene Family AT1G56430 55.5 4.2e-97 351.7
Cec02g1579 . 3 276 Nicotianamine Synthase Gene Family AT1G56430 59.3 2.1e-88 322.8
Cec06g1523 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 52.2 9.1e-76 280.8
Cec02g1578 . 1 275 Nicotianamine Synthase Gene Family AT5G04950 58.1 1.4e-89 326.6
Cec02g1579 . 1 276 Nicotianamine Synthase Gene Family AT5G04950 57.0 7.1e-89 324.3
Cec03g1831 . 1 273 Nicotianamine Synthase Gene Family AT5G04950 55.8 7.1e-89 324.3
Cec02g1578 . 1 275 Nicotianamine Synthase Gene Family AT5G56080 59.1 2.0e-91 332.8
Cec03g1831 . 1 273 Nicotianamine Synthase Gene Family AT5G56080 56.4 1.2e-88 323.6
Cec02g1579 . 1 276 Nicotianamine Synthase Gene Family AT5G56080 56.5 1.3e-87 320.1
Cec06g1523 . 18 281 Nicotianamine Synthase Gene Family AT5G56080 50.9 7.4e-70 261.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125